Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 7.9e-155 550.4 284 100.0
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.5e-118 428.3 360 69.7
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.7e-112 408.7 397 63.2
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 2.0e-110 402.9 360 65.6
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.9e-100 369.8 359 60.7
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 2.1e-91 339.7 361 58.2
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 3.0e-85 319.3 361 55.1
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 5.8e-73 278.5 360 48.3
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 1.6e-70 270.4 360 48.6
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.7e-70 269.6 360 49.4
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 1.9e-68 263.5 353 48.7
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 2.5e-68 263.1 359 46.2
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 2.5e-68 263.1 359 46.2
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 1.6e-67 260.4 361 46.5
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.6e-67 259.2 360 46.7
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 3.6e-67 259.2 359 45.7
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.7e-67 258.8 362 47.0
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 6.2e-67 258.5 363 47.7
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.1e-66 257.7 354 46.3
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.4e-66 257.3 255 59.6
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 1.8e-66 256.9 360 47.2
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 3.1e-66 256.1 363 46.0
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 3.1e-66 256.1 360 47.5
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 2.9e-64 249.6 365 45.2
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 1.1e-63 247.7 354 46.0
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.4e-63 246.5 361 44.9
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.4e-63 246.5 361 44.9
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 3.2e-63 246.1 361 46.3
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 2.7e-62 243.0 359 44.8
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 6.0e-62 241.9 311 48.2
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.7e-61 240.4 359 44.6
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 3.9e-61 239.2 353 43.3
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 6.6e-61 238.4 353 43.9
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.1e-60 237.7 360 43.1
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.9e-60 236.9 255 56.1
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 5.6e-60 235.3 355 43.7
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 9.6e-60 234.6 325 45.8
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 2.8e-59 233.0 247 57.9
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 2.8e-59 233.0 359 43.5
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 3.6e-59 232.6 360 44.7
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 6.2e-59 231.9 361 43.8
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 8.1e-59 231.5 360 43.6
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 8.1e-59 231.5 295 48.1
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.4e-58 230.7 352 43.5
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 2.4e-58 229.9 268 51.9
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 1.5e-57 227.3 256 53.1
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 3.4e-57 226.1 352 42.0
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 3.4e-57 226.1 359 42.3
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 4.4e-57 225.7 397 42.6
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 5.8e-57 225.3 352 42.3
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 1.7e-56 223.8 353 42.8
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 9.3e-55 218.0 362 40.9
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.2e-54 217.6 362 41.2
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 2.7e-54 216.5 284 48.2
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 2.7e-54 216.5 283 48.8
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 3.0e-53 213.0 255 48.6
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 8.7e-53 211.5 253 53.4
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 9.6e-52 208.0 255 49.0
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 3.6e-51 206.1 243 53.5
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 1.1e-50 204.5 329 41.9
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 1.8e-50 203.8 250 50.4
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 3.1e-50 203.0 226 53.5
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 1.2e-49 201.1 315 43.8
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 2.2e-48 196.8 329 42.6
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.1e-47 194.5 348 42.0
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 1.9e-47 193.7 256 47.7
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 7.9e-46 188.3 291 43.3
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 1.8e-45 187.2 247 47.0
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.3e-45 186.8 289 43.6
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.3e-45 186.8 289 43.6
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 3.0e-45 186.4 254 44.9
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 3.9e-45 186.0 364 38.2
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 6.7e-45 185.3 330 39.7
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 8.7e-45 184.9 355 36.9
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 1.9e-44 183.7 262 45.4
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 7.4e-44 181.8 257 45.9
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 1.6e-43 180.6 187 58.3
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 2.1e-43 180.3 248 46.0
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 3.7e-43 179.5 255 43.9
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 3.7e-43 179.5 256 44.9
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.8e-42 177.2 360 37.2
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 4.0e-42 176.0 341 35.2
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 5.3e-42 175.6 256 43.8
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 5.3e-42 175.6 258 45.3
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 9.0e-42 174.9 359 34.3
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.0e-41 173.7 189 54.0
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 4.5e-41 172.6 331 39.0
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 4.5e-41 172.6 255 44.3
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 7.6e-41 171.8 255 40.4
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.0e-40 171.4 259 44.4
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 2.9e-40 169.9 214 50.5
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 3.8e-40 169.5 253 41.9
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 4.9e-40 169.1 255 43.5
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 1.9e-39 167.2 255 44.3
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.2e-39 166.4 151 64.9
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 3.2e-39 166.4 244 45.5
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 7.1e-39 165.2 255 43.5
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 1.6e-38 164.1 255 42.4
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 2.1e-38 163.7 163 57.7
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.7e-38 163.3 433 33.9
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 2.7e-38 163.3 248 42.3
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 4.6e-38 162.5 256 39.5
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 6.0e-38 162.2 270 39.6
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 7.9e-38 161.8 258 43.4
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 5.7e-36 155.6 257 37.0
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 5.7e-36 155.6 418 33.3
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 7.4e-36 155.2 300 40.7
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 1.3e-35 154.5 357 34.5
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 3.7e-35 152.9 260 38.1
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 8.2e-35 151.8 260 37.3
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 8.2e-35 151.8 253 39.9
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.4e-34 151.0 244 43.9
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.4e-34 151.0 329 37.1
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 9.0e-34 148.3 203 41.4
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.2e-33 147.9 203 40.9
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 2.0e-33 147.1 251 37.1
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 4.5e-33 146.0 203 41.4
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 5.9e-33 145.6 257 36.6
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 7.6e-33 145.2 253 40.7
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.2e-32 143.7 256 41.0
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 3.8e-32 142.9 203 40.9
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 8.5e-32 141.7 197 41.1
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 8.5e-32 141.7 197 41.1
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 8.5e-32 141.7 197 41.1
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 1.4e-31 141.0 204 41.2
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.1e-30 137.1 253 39.9
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 8.7e-29 131.7 199 39.2
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 8.7e-29 131.7 199 39.2
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 1.1e-28 131.3 199 39.2
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 1.1e-28 131.3 199 39.2
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 1.1e-28 131.3 256 37.9
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 9.7e-28 128.3 359 32.6
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 9.0e-26 121.7 193 38.3
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.6e-25 120.2 218 37.6
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 4.5e-25 119.4 201 39.3
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 7.7e-25 118.6 192 40.6
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.7e-24 117.5 252 39.3
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 1.9e-23 114.0 160 42.5
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.2e-23 113.2 251 36.7
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 5.5e-23 112.5 237 34.6
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 7.2e-23 112.1 234 37.2
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.6e-22 110.9 244 36.1
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 2.1e-22 110.5 161 43.5
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 6.1e-22 109.0 131 48.1
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 1.8e-21 107.5 241 31.5
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 3.9e-21 106.3 92 63.0
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 2.2e-19 100.5 228 34.2
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 2.4e-18 97.1 159 40.3
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.0e-17 94.0 105 55.2
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.0e-16 91.7 139 41.7
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.7e-16 90.9 108 55.6
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 6.5e-16 89.0 245 29.4
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 8.5e-16 88.6 85 60.0
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.2e-15 86.7 55 81.8
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 7.9e-14 82.0 84 47.6
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 3.7e-11 73.2 173 35.3
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 4.5e-09 66.2 125 34.4
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 7.2e-07 58.9 136 34.6
SMO174G0183 Selaginella moellendorffii HOM05D010282 ORTHO05D004792 9.4e-07 58.5 206 30.1
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 2.7e-06 57.0 72 48.6


User provided reference genes

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