Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0655 Fragaria x ananassa HOM05D022917 ORTHO05D029493 2.4e-95 352.1 168 100.0
FAN21G3385 Fragaria x ananassa HOM05D022917 ORTHO05D029493 6.1e-54 214.5 151 73.5
FAN25G1341 Fragaria x ananassa HOM05D022917 ORTHO05D029493 4.2e-39 165.2 212 47.6
FvH4_3g44160 Fragaria vesca HOM05D022917 ORTHO05D029493 2.1e-30 136.3 168 53.0
FAN11G3243 Fragaria x ananassa HOM05D022917 ORTHO05D210612 5.4e-18 95.1 91 58.2
FvH4_4g35560 Fragaria vesca HOM05D000075 ORTHO05D000073 4.5e-17 92.0 86 60.5
FAN07G0430 Fragaria x ananassa HOM05D000075 ORTHO05D000073 4.5e-17 92.0 86 60.5
FAN12G3337 Fragaria x ananassa HOM05D000075 ORTHO05D000073 4.5e-17 92.0 86 60.5
FAN17G2599 Fragaria x ananassa HOM05D000075 ORTHO05D000073 4.5e-17 92.0 86 59.3
FAN22G0865 Fragaria x ananassa HOM05D000075 ORTHO05D000073 4.5e-17 92.0 86 60.5
RcHm_v2.0_Chr4g0445201 Rosa chinensis HOM05D000075 ORTHO05D000073 7.3e-15 84.7 84 57.1
Prupe.1G264700 Prunus persica HOM05D000075 ORTHO05D000073 1.0e-13 80.9 56 73.2
MD16G1081100 Malus domestica HOM05D000075 ORTHO05D000073 3.4e-12 75.9 56 69.6
Prupe.1G264900 Prunus persica HOM05D000075 ORTHO05D000073 7.5e-12 74.7 58 63.8
CSS0040090 Camellia sinensis var. sinensis HOM05D000075 ORTHO05D000073 2.2e-11 73.2 56 64.3
MD13G1082000 Malus domestica HOM05D000075 ORTHO05D000073 6.4e-11 71.6 56 62.5
MD13G1081900 Malus domestica HOM05D000075 ORTHO05D000073 1.1e-10 70.9 58 62.1
PGR119G2220 Punica granatum HOM05D000075 ORTHO05D000073 1.1e-10 70.9 56 58.9
Sabra10G0029300 Salix brachista HOM05D000075 ORTHO05D000073 1.1e-10 70.9 56 62.5
Cpa.g.sc1.380 Carica papaya HOM05D000075 ORTHO05D000073 1.8e-10 70.1 105 41.0
COL.COLO4_36223 Corchorus olitorius HOM05D000075 ORTHO05D000073 1.8e-10 70.1 94 47.9
Duzib248G1359 Durio zibethinus HOM05D000075 ORTHO05D000073 1.8e-10 70.1 56 64.3
Eucgr.B02584 Eucalyptus grandis HOM05D000075 ORTHO05D000073 1.8e-10 70.1 56 64.3
Nn3g17095 Nelumbo nucifera HOM05D000075 ORTHO05D000073 2.4e-10 69.7 56 58.9
Thecc.02G235400 Theobroma cacao HOM05D000075 ORTHO05D000073 2.4e-10 69.7 56 57.1
GSVIVG01020103001 Vitis vinifera HOM05D000075 ORTHO05D000073 3.2e-10 69.3 84 50.0
Duzib251G0455 Durio zibethinus HOM05D000075 ORTHO05D000073 4.1e-10 68.9 103 41.7
Hma1.2p1_0265F.1_g106460 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 4.1e-10 68.9 56 64.3
Nitab4.5_0001726g0110 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.1e-10 68.9 83 48.2
COL.COLO4_36225 Corchorus olitorius HOM05D000075 ORTHO05D000073 5.4e-10 68.6 84 45.2
MD13G1082100 Malus domestica HOM05D000075 ORTHO05D000073 5.4e-10 68.6 55 60.0
Hund25285 Selenicereus undatus HOM05D000075 ORTHO05D000073 5.4e-10 68.6 56 60.7
Cpa.g.sc1.379 Carica papaya HOM05D000075 ORTHO05D000073 9.2e-10 67.8 88 42.0
Duzib251G0322 Durio zibethinus HOM05D000075 ORTHO05D000073 9.2e-10 67.8 56 58.9
Potri.010G035500 Populus trichocarpa HOM05D000075 ORTHO05D000073 9.2e-10 67.8 56 55.4
Gohir.A04G097300 Gossypium hirsutum HOM05D000075 ORTHO05D000073 1.2e-09 67.4 56 55.4
Gorai.012G121400 Gossypium raimondii HOM05D000075 ORTHO05D000073 1.2e-09 67.4 56 55.4
Potri.010G032800 Populus trichocarpa HOM05D000075 ORTHO05D000073 1.2e-09 67.4 56 55.4
Dinv24942 Davidia involucrata HOM05D008552 ORTHO05D000073 1.6e-09 67.0 59 55.9
FAN17G1025 Fragaria x ananassa HOM05D000075 ORTHO05D000073 1.6e-09 67.0 86 46.5
Actinidia19849 Actinidia chinensis HOM05D000075 ORTHO05D000073 2.0e-09 66.6 56 58.9
Lj6A796T89 Lonicera japonica HOM05D000075 ORTHO05D000073 2.0e-09 66.6 84 47.6
Thecc.02G235100 Theobroma cacao HOM05D000075 ORTHO05D000073 2.7e-09 66.2 56 58.9
Cfa009059 Carpinus fangiana HOM05D000075 ORTHO05D000073 3.5e-09 65.9 57 59.6
Cfa009058 Carpinus fangiana HOM05D000075 ORTHO05D000073 4.6e-09 65.5 88 44.3
COL.COLO4_36229 Corchorus olitorius HOM05D000075 ORTHO05D000073 4.6e-09 65.5 56 55.4
QL03p066439 Quercus lobata HOM05D000075 ORTHO05D000073 4.6e-09 65.5 56 64.3
vmacro16315 Vaccinium macrocarpon HOM05D000075 ORTHO05D000073 4.6e-09 65.5 56 57.1
Thhalv10009674m.g Eutrema salsugineum HOM05D000075 ORTHO05D000073 5.9e-09 65.1 56 53.6
Gohir.D04G137100 Gossypium hirsutum HOM05D000075 ORTHO05D000073 5.9e-09 65.1 56 53.6
Lalb_Chr16g0392551 Lupinus albus HOM05D000075 ORTHO05D000073 5.9e-09 65.1 86 40.7
Solyc05g006730.4 Solanum lycopersicum HOM05D000075 ORTHO05D000073 5.9e-09 65.1 56 58.9
Thecc.02G235600 Theobroma cacao HOM05D000075 ORTHO05D000073 5.9e-09 65.1 55 54.5
PGSC0003DMG400015726 Solanum tuberosum HOM05D000075 ORTHO05D000073 7.8e-09 64.7 56 55.4
A06p07030 Brassica napus HOM05D000075 ORTHO05D000073 1.0e-08 64.3 56 55.4
BraA06t23917Z Brassica rapa HOM05D000075 ORTHO05D000073 1.0e-08 64.3 56 55.4
Cfa009060 Carpinus fangiana HOM05D000075 ORTHO05D000073 1.0e-08 64.3 51 64.7
Thhalv10019743m.g Eutrema salsugineum HOM05D000075 ORTHO05D000073 1.0e-08 64.3 54 55.6
PGR119G2165 Punica granatum HOM05D000075 ORTHO05D000073 1.0e-08 64.3 56 55.4
Aa31LG1G4560 Aethionema arabicum HOM05D000075 ORTHO05D000073 1.3e-08 63.9 62 48.4
AUR62026484 Chenopodium quinoa HOM05D000075 ORTHO05D000073 1.3e-08 63.9 56 55.4
Duzib248G1542 Durio zibethinus HOM05D000075 ORTHO05D000073 1.3e-08 63.9 56 51.8
Rhsim12G0128500 Rhododendron simsii HOM05D000075 ORTHO05D000073 1.3e-08 63.9 82 43.9
Sc04g0008540 Simmondsia chinensis HOM05D000075 ORTHO05D000073 1.3e-08 63.9 56 53.6
vmacro01215 Vaccinium macrocarpon HOM05D000075 ORTHO05D000073 1.3e-08 63.9 58 55.2
GSVIVG01020100001 Vitis vinifera HOM05D000075 ORTHO05D000073 1.3e-08 63.9 84 44.0
C05p08520 Brassica napus HOM05D000075 ORTHO05D000073 1.7e-08 63.5 56 53.6
Gohir.A11G195400 Gossypium hirsutum HOM05D000075 ORTHO05D000073 1.7e-08 63.5 56 53.6
EL10Ac6g13124 Beta vulgaris HOM05D000075 ORTHO05D000073 2.3e-08 63.2 56 53.6
CAN.G27.44 Capsicum annuum HOM05D000075 ORTHO05D000073 3.0e-08 62.8 56 55.4
Gohir.D11G232100 Gossypium hirsutum HOM05D000075 ORTHO05D000073 3.0e-08 62.8 56 53.6
Gorai.007G245500 Gossypium raimondii HOM05D000075 ORTHO05D000073 3.0e-08 62.8 56 53.6
Hma1.2p1_0265F.1_g106470 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 3.0e-08 62.8 56 57.1
RhsimUnG0180200 Rhododendron simsii HOM05D000075 ORTHO05D000073 3.0e-08 62.8 57 54.4
RhsimUnG0211400 Rhododendron simsii HOM05D000075 ORTHO05D000073 3.0e-08 62.8 57 54.4
TAR622G1248 Trochodendron aralioides HOM05D000075 ORTHO05D000073 3.0e-08 62.8 56 53.6
BcaC08g45850 Brassica carinata HOM05D000075 ORTHO05D000073 3.9e-08 62.4 54 51.9
C06p36400 Brassica napus HOM05D000075 ORTHO05D000073 3.9e-08 62.4 54 51.9
BolC6t38759H Brassica oleracea HOM05D000075 ORTHO05D000073 3.9e-08 62.4 54 51.9
AUR62026483 Chenopodium quinoa HOM05D000075 ORTHO05D000073 3.9e-08 62.4 55 54.5
AL1G21100 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 5.0e-08 62.0 56 51.8
BcaC05g24891 Brassica carinata HOM05D000075 ORTHO05D000073 6.6e-08 61.6 56 53.6
C05p08510 Brassica napus HOM05D000075 ORTHO05D000073 6.6e-08 61.6 56 53.6
BolC5t29602H Brassica oleracea HOM05D000075 ORTHO05D000073 6.6e-08 61.6 56 53.6
Sp1g08970 Schrenkiella parvula HOM05D000075 ORTHO05D000073 6.6e-08 61.6 56 53.6
Carub.0001s0979 Capsella rubella HOM05D000075 ORTHO05D000073 1.1e-07 60.8 56 50.0
Hma1.2p1_0289F.1_g114260 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 1.1e-07 60.8 56 50.0
Rhsim12G0053900 Rhododendron simsii HOM05D000182 ORTHO05D000112 1.1e-07 60.8 57 52.6
BcaC03g15145 Brassica carinata HOM05D000075 ORTHO05D000073 1.5e-07 60.5 54 53.7
A02p16240 Brassica napus HOM05D000075 ORTHO05D000073 1.5e-07 60.5 54 53.7
BolC2t08770H Brassica oleracea HOM05D000075 ORTHO05D000073 1.5e-07 60.5 54 53.7
BraA02t06684Z Brassica rapa HOM05D000075 ORTHO05D000073 1.5e-07 60.5 54 53.7
AUR62026289 Chenopodium quinoa HOM05D000075 ORTHO05D000073 1.5e-07 60.5 55 54.5
AT1G10360 Arabidopsis thaliana HOM05D000075 ORTHO05D000073 1.9e-07 60.1 56 50.0
BcaC08g46442 Brassica carinata HOM05D000075 ORTHO05D000073 1.9e-07 60.1 54 51.9
A07p36380 Brassica napus HOM05D000075 ORTHO05D000073 1.9e-07 60.1 54 51.9
C06p43800 Brassica napus HOM05D000075 ORTHO05D000073 1.9e-07 60.1 54 51.9
BolC6t39452H Brassica oleracea HOM05D000075 ORTHO05D000073 1.9e-07 60.1 54 51.9
BraA07t31210Z Brassica rapa HOM05D000075 ORTHO05D000073 1.9e-07 60.1 54 51.9
Carub.0002s1664 Capsella rubella HOM05D000075 ORTHO05D000073 1.9e-07 60.1 54 51.9
Cc11_g13710 Coffea canephora HOM05D000075 ORTHO05D000073 1.9e-07 60.1 85 43.5
Hma1.2p1_0289F.1_g114280 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 1.9e-07 60.1 55 61.8
Hma1.2p1_1045F.1_g251320 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 1.9e-07 60.1 56 48.2
Sopen12g026980 Solanum pennellii HOM05D000075 ORTHO05D000073 1.9e-07 60.1 56 51.8
C02p27080 Brassica napus HOM05D000075 ORTHO05D000073 2.5e-07 59.7 54 53.7
Thhalv10008682m.g Eutrema salsugineum HOM05D000075 ORTHO05D000073 2.5e-07 59.7 56 50.0
AT1G10370 Arabidopsis thaliana HOM05D000075 ORTHO05D000073 3.3e-07 59.3 56 50.0
BcaB03g15519 Brassica carinata HOM05D000075 ORTHO05D000073 3.3e-07 59.3 54 50.0
BcaC05g24920 Brassica carinata HOM05D000075 ORTHO05D000073 3.3e-07 59.3 55 52.7
A07p31270 Brassica napus HOM05D000075 ORTHO05D000073 3.3e-07 59.3 54 50.0
BraA07t30761Z Brassica rapa HOM05D000075 ORTHO05D000073 3.3e-07 59.3 54 50.0
Carub.0001s2381 Capsella rubella HOM05D000075 ORTHO05D000073 3.3e-07 59.3 96 37.5
Dinv31160 Davidia involucrata HOM05D000075 ORTHO05D000073 3.3e-07 59.3 55 56.4
Aa31LG4G10890 Aethionema arabicum HOM05D000075 ORTHO05D000073 4.3e-07 58.9 54 50.0
Ah.02g131910 Amaranthus hybridus HOM05D000075 ORTHO05D000073 4.3e-07 58.9 56 46.4
AUR62026290 Chenopodium quinoa HOM05D000075 ORTHO05D000073 4.3e-07 58.9 57 50.9
CSS0026654 Camellia sinensis var. sinensis HOM05D000075 ORTHO05D000073 5.6e-07 58.5 83 42.2
LjContig00155g0009699 Lotus japonicus HOM05D000075 ORTHO05D000073 5.6e-07 58.5 85 38.8
QL03p066458 Quercus lobata HOM05D000075 ORTHO05D000073 5.6e-07 58.5 56 58.9
AL1G21110 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 7.3e-07 58.2 56 50.0
BcaB05g24505 Brassica carinata HOM05D000075 ORTHO05D000073 7.3e-07 58.2 54 51.9
CARHR010500 Cardamine hirsuta HOM05D000075 ORTHO05D000073 7.3e-07 58.2 56 50.0
CARHR063020 Cardamine hirsuta HOM05D000075 ORTHO05D000073 7.3e-07 58.2 54 50.0
QL03p066465 Quercus lobata HOM05D000075 ORTHO05D000073 7.3e-07 58.2 55 56.4
Sp5g25050 Schrenkiella parvula HOM05D000075 ORTHO05D000073 7.3e-07 58.2 54 50.0
TAR622G0854 Trochodendron aralioides HOM05D000075 ORTHO05D000073 7.3e-07 58.2 56 51.8
AL22U10040 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 9.5e-07 57.8 54 50.0
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 9.5e-07 57.8 56 44.6
CSS0028669 Camellia sinensis var. sinensis HOM05D000075 ORTHO05D000073 9.5e-07 57.8 56 53.6
Hma1.2p1_0289F.1_g114250 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 9.5e-07 57.8 55 47.3
RhsimUnG0179000 Rhododendron simsii HOM05D000075 ORTHO05D000073 9.5e-07 57.8 55 52.7
COL.COLO4_36231 Corchorus olitorius HOM05D000075 ORTHO05D000073 1.2e-06 57.4 84 40.5
Oeu057169.1 Olea europaea HOM05D000075 ORTHO05D000073 1.2e-06 57.4 56 51.8
vmacro01217 Vaccinium macrocarpon HOM05D000075 ORTHO05D000073 1.2e-06 57.4 56 51.8
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 1.6e-06 57.0 54 57.4
COL.COLO4_36230 Corchorus olitorius HOM05D000075 ORTHO05D000073 1.6e-06 57.0 56 50.0
Rhsim05G0103600 Rhododendron simsii HOM05D000075 ORTHO05D000073 1.6e-06 57.0 55 50.9
A09p65120 Brassica napus HOM05D000075 ORTHO05D000073 2.1e-06 56.6 56 48.2
BolC8t52438H Brassica oleracea HOM05D000075 ORTHO05D000073 2.1e-06 56.6 56 48.2
BraA09t41855Z Brassica rapa HOM05D000075 ORTHO05D000073 2.1e-06 56.6 56 48.2
DCAR_024497 Daucus carota HOM05D000075 ORTHO05D000073 2.1e-06 56.6 56 51.8
Glyma.01G040200 Glycine max HOM05D000075 ORTHO05D000073 2.8e-06 56.2 65 40.0
BcaB08g37345 Brassica carinata HOM05D000075 ORTHO05D000073 3.6e-06 55.8 56 48.2
Rhsim12G0053700 Rhododendron simsii HOM05D000075 ORTHO05D000073 3.6e-06 55.8 57 49.1
THA.LOC104816739 Tarenaya hassleriana HOM05D000075 ORTHO05D000073 3.6e-06 55.8 56 44.6
TWI36G1319 Tripterygium wilfordii HOM05D000075 ORTHO05D000073 3.6e-06 55.8 84 42.9
AT1G27130 Arabidopsis thaliana HOM05D000075 ORTHO05D000073 4.7e-06 55.5 54 51.9
arahy.Tifrunner.gnm1.ann1.EA2ZEQ Arachis hypogaea HOM05D000075 ORTHO05D000073 4.7e-06 55.5 56 42.9
arahy.Tifrunner.gnm1.ann1.HC540V Arachis hypogaea HOM05D000075 ORTHO05D000073 4.7e-06 55.5 100 36.0
BcaC07g41833 Brassica carinata HOM05D000075 ORTHO05D000073 4.7e-06 55.5 56 48.2
CAN.G2889.1 Capsicum annuum HOM05D000075 ORTHO05D000073 4.7e-06 55.5 86 38.4
Ciclev10032680m.g Citrus clementina HOM05D000075 ORTHO05D000073 4.7e-06 55.5 56 50.0
Dinv31161 Davidia involucrata HOM05D000075 ORTHO05D000073 4.7e-06 55.5 55 52.7
Thhalv10008691m.g Eutrema salsugineum HOM05D000075 ORTHO05D000073 4.7e-06 55.5 86 40.7
Gohir.D11G066500 Gossypium hirsutum HOM05D000075 ORTHO05D000073 4.7e-06 55.5 56 50.0
Gorai.007G072000 Gossypium raimondii HOM05D000075 ORTHO05D000073 4.7e-06 55.5 56 50.0
Lj6A796T86 Lonicera japonica HOM05D000075 ORTHO05D000073 4.7e-06 55.5 56 48.2
TAR626G1199 Trochodendron aralioides HOM05D000075 ORTHO05D000073 4.7e-06 55.5 56 48.2
MSTRG.661 Avicennia marina HOM05D000075 ORTHO05D000073 6.2e-06 55.1 56 44.6
BcaC06g35088 Brassica carinata HOM05D000075 ORTHO05D000073 6.2e-06 55.1 62 45.2
A07p13360 Brassica napus HOM05D000075 ORTHO05D000073 6.2e-06 55.1 62 45.2
C07p19980 Brassica napus HOM05D000075 ORTHO05D000073 6.2e-06 55.1 62 45.2
BolC7t42517H Brassica oleracea HOM05D000075 ORTHO05D000073 6.2e-06 55.1 62 45.2
BraA07t29108Z Brassica rapa HOM05D000075 ORTHO05D000073 6.2e-06 55.1 62 45.2
CiPaw.06G079200 Carya illinoinensis HOM05D000075 ORTHO05D000073 6.2e-06 55.1 85 45.9
RhsimUnG0178900 Rhododendron simsii HOM05D000075 ORTHO05D000073 6.2e-06 55.1 57 49.1
Sp1g21640 Schrenkiella parvula HOM05D000075 ORTHO05D000073 6.2e-06 55.1 86 39.5
THA.LOC104822937 Tarenaya hassleriana HOM05D000075 ORTHO05D000073 6.2e-06 55.1 54 50.0
THA.LOC104822939 Tarenaya hassleriana HOM05D000075 ORTHO05D000073 6.2e-06 55.1 54 50.0
Gohir.A11G062800 Gossypium hirsutum HOM05D000075 ORTHO05D000073 8.0e-06 54.7 56 48.2
Oeu013605.1 Olea europaea HOM05D000075 ORTHO05D000073 8.0e-06 54.7 56 48.2
RcHm_v2.0_Chr5g0060741 Rosa chinensis HOM05D000075 ORTHO05D000073 8.0e-06 54.7 56 53.6


User provided reference genes

Program Settings