Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.9e-67 257.7 132 100.0
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.0e-64 250.0 133 98.5
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 7.1e-42 174.1 134 74.6
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 9.7e-39 163.7 91 96.7
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 9.0e-37 157.1 91 94.5
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 6.7e-32 141.0 94 86.2
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 3.1e-29 132.1 94 79.8
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 5.3e-29 131.3 94 77.7
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 1.7e-22 109.8 110 59.1
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 1.8e-21 106.3 89 68.5
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 3.1e-21 105.5 101 61.4
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 4.1e-21 105.1 83 67.5
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 6.9e-21 104.4 94 63.8
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 6.9e-21 104.4 95 66.3
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 9.1e-21 104.0 95 64.2
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 1.5e-20 103.2 88 67.0
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 2.0e-20 102.8 99 60.6
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 2.6e-20 102.4 95 63.2
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 2.6e-20 102.4 91 63.7
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 4.5e-20 101.7 82 69.5
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 5.9e-20 101.3 92 63.0
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.0e-19 100.5 92 63.0
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 1.3e-19 100.1 88 63.6
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.3e-19 100.1 94 61.7
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 1.3e-19 100.1 88 63.6
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.7e-19 99.8 91 63.7
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 1.7e-19 99.8 88 63.6
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 2.2e-19 99.4 94 62.8
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 2.9e-19 99.0 78 66.7
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 3.8e-19 98.6 82 65.9
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 3.8e-19 98.6 100 56.0
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 5.0e-19 98.2 77 66.2
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 5.0e-19 98.2 95 60.0
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 6.5e-19 97.8 94 57.4
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 6.5e-19 97.8 77 68.8
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 8.5e-19 97.4 95 60.0
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 1.1e-18 97.1 82 64.6
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 1.1e-18 97.1 79 64.6
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 1.4e-18 96.7 94 58.5
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 1.4e-18 96.7 107 53.3
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 4.2e-18 95.1 94 63.8
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 7.2e-18 94.4 73 72.6
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 7.2e-18 94.4 83 65.1
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 9.4e-18 94.0 87 58.6
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 1.2e-17 93.6 93 59.1
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 1.6e-17 93.2 97 61.9
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 2.7e-17 92.4 82 61.0
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 4.7e-17 91.7 96 58.3
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 6.1e-17 91.3 82 54.9
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 6.1e-17 91.3 89 58.4
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 8.0e-17 90.9 71 69.0
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.0e-16 90.5 84 61.9
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 1.0e-16 90.5 84 61.9
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 1.0e-16 90.5 67 71.6
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 1.4e-16 90.1 84 60.7
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 1.8e-16 89.7 105 52.4
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 1.8e-16 89.7 89 59.6
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 3.9e-16 88.6 95 53.7
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 3.9e-16 88.6 84 60.7
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 5.2e-16 88.2 74 63.5
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 6.7e-16 87.8 90 60.0
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 1.1e-15 87.0 95 50.5
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 1.1e-15 87.0 89 52.8
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 2.0e-15 86.3 94 54.3
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 2.6e-15 85.9 87 54.0
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 7.4e-15 84.3 82 59.8
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 9.7e-15 84.0 70 64.3
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 1.7e-14 83.2 84 59.5
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 2.2e-14 82.8 80 61.2
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 2.8e-14 82.4 91 49.5
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 2.8e-14 82.4 79 59.5
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 3.7e-14 82.0 59 72.9
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 1.1e-13 80.5 89 49.4
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 1.1e-13 80.5 76 56.6
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 1.4e-13 80.1 77 58.4
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 1.4e-13 80.1 91 48.4
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 2.4e-13 79.3 77 55.8
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 3.1e-13 79.0 71 57.7
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 4.1e-13 78.6 106 47.2
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 5.3e-13 78.2 71 59.2
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 2.0e-12 76.3 91 51.6
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 4.5e-12 75.1 97 48.5
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 5.9e-12 74.7 80 48.8
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 7.7e-12 74.3 78 50.0
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 1.0e-11 73.9 71 57.7
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 1.7e-11 73.2 60 63.3
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 6.5e-11 71.2 98 45.9
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 1.9e-10 69.7 97 46.4
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 4.2e-10 68.6 96 46.9
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 4.2e-10 68.6 96 46.9
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 7.2e-10 67.8 75 54.7
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 3.6e-09 65.5 76 50.0
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 3.6e-09 65.5 49 71.4
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 8.0e-09 64.3 64 56.2
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 6.7e-08 61.2 70 45.7
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 8.8e-08 60.8 69 53.6
ATR0414G001 Amborella trichopoda HOM05D007627 ORTHO05D009640 7.5e-07 57.8 52 51.9


User provided reference genes

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