Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.8e-165 585.9 308 100.0
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 1.0e-163 580.1 308 99.0
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.5e-163 577.0 308 98.7
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.5e-162 576.2 308 98.7
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.2e-158 562.4 301 98.0
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 1.1e-146 523.5 308 89.6
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 9.3e-109 397.5 316 71.5
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.1e-106 390.6 314 72.0
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 3.4e-103 379.0 312 70.8
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 8.7e-91 337.8 314 62.4
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 5.8e-87 325.1 304 63.2
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 2.9e-86 322.8 302 62.9
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 6.5e-86 321.6 299 62.2
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 3.2e-85 319.3 315 61.3
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 3.0e-83 312.8 317 59.0
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 8.7e-83 311.2 314 60.8
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.9e-82 310.1 321 61.1
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 3.3e-82 309.3 299 63.2
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.4e-80 303.9 316 57.9
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 2.6e-79 299.7 310 58.4
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.2e-78 296.6 298 58.1
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 5.5e-77 292.0 303 60.4
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 5.5e-77 292.0 310 56.5
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 7.2e-77 291.6 298 57.4
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 2.1e-76 290.0 340 54.7
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 7.9e-76 288.1 308 55.5
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.3e-75 286.6 316 55.4
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 1.1e-74 284.3 309 55.7
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 3.3e-74 282.7 315 55.6
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.2e-73 280.0 306 55.2
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 1.8e-72 276.9 302 55.3
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 3.1e-72 276.2 319 54.9
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 2.6e-71 273.1 301 53.8
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 7.7e-71 271.6 316 52.5
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.3e-70 270.8 321 54.2
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.3e-70 270.8 301 53.5
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.7e-70 270.4 315 52.7
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 5.0e-70 268.9 302 54.3
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.1e-69 267.7 301 53.2
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 4.2e-69 265.8 314 52.2
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 9.4e-69 264.6 303 52.1
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.2e-68 264.2 306 52.9
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 3.6e-68 262.7 313 51.8
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 3.6e-68 262.7 304 53.0
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.7e-68 262.3 316 52.5
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.0e-67 261.2 315 51.7
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 1.0e-67 261.2 315 51.4
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.4e-67 260.8 301 50.5
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 3.0e-67 259.6 285 56.8
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 5.1e-67 258.8 306 52.9
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 5.1e-67 258.8 302 52.0
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 8.8e-67 258.1 308 52.9
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.5e-66 257.3 313 53.0
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.7e-65 253.8 310 53.9
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 2.2e-65 253.4 310 51.3
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 2.8e-65 253.1 301 53.2
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 3.7e-65 252.7 308 53.2
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.4e-64 250.8 313 52.4
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.4e-64 250.8 310 52.6
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.8e-64 250.4 309 52.1
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.8e-64 250.4 252 57.5
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 5.3e-64 248.8 316 49.4
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.5e-63 247.3 301 50.8
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 3.5e-63 246.1 309 51.8
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 3.5e-63 246.1 327 49.2
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 3.5e-63 246.1 307 48.5
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 8.5e-62 241.5 292 51.7
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.4e-61 240.7 311 49.8
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.4e-61 240.7 311 50.2
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 4.2e-61 239.2 309 51.8
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.2e-61 239.2 316 47.5
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 5.5e-61 238.8 301 51.2
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 7.2e-61 238.4 276 52.2
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 9.4e-61 238.0 305 49.5
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.7e-60 236.5 311 49.8
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 2.7e-60 236.5 316 47.8
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.7e-60 236.5 311 49.8
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 2.7e-60 236.5 311 49.8
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.6e-60 236.1 314 46.8
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 4.7e-60 235.7 313 49.8
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 6.1e-60 235.3 311 49.5
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 6.1e-60 235.3 312 52.6
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 8.0e-60 235.0 333 46.5
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.8e-59 233.8 310 47.7
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 2.3e-59 233.4 295 51.2
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 3.0e-59 233.0 311 49.5
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 8.8e-59 231.5 312 49.7
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 1.5e-58 230.7 311 49.2
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 1.5e-58 230.7 311 49.2
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 2.0e-58 230.3 306 48.0
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 2.6e-58 229.9 311 51.1
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 9.7e-58 228.0 265 52.5
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.8e-57 226.5 286 49.0
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 8.2e-57 224.9 315 49.8
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.4e-56 223.4 312 46.5
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 2.4e-56 223.4 312 50.6
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 2.4e-56 223.4 302 48.0
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.1e-56 222.6 319 44.8
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.1e-56 222.6 319 44.8
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 5.3e-56 222.2 303 48.2
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 9.1e-56 221.5 315 48.3
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 1.3e-54 217.6 309 48.2
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.2e-54 216.9 301 47.8
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 2.9e-54 216.5 301 47.8
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.5e-53 214.2 246 50.4
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 2.7e-52 209.9 323 45.5
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 1.0e-51 208.0 303 46.5
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 8.8e-51 204.9 278 45.7
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 3.3e-50 203.0 267 46.4
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 5.7e-50 202.2 197 62.4
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 1.3e-49 201.1 302 45.0
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.7e-49 200.7 270 45.9
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 8.3e-49 198.4 263 49.4
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.3e-46 191.0 307 45.3
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 1.2e-44 184.5 300 42.7
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.6e-44 184.1 300 42.7
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 6.8e-43 178.7 281 42.0
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-42 177.9 281 42.0
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 5.7e-42 175.6 300 41.3
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.1e-40 171.4 251 45.4
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 2.8e-36 156.8 157 58.6
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 5.6e-29 132.5 276 37.3
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.9e-25 120.2 145 53.8
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 1.1e-21 108.2 176 41.5
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.9e-21 107.5 129 51.2
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 3.0e-14 83.6 122 45.9
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 6.6e-14 82.4 215 31.2
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 4.0e-11 73.2 87 47.1
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 5.8e-10 69.3 65 60.0


User provided reference genes

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