Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.5e-47 191.8 100 100.0
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.6e-47 190.7 100 99.0
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.6e-46 189.1 100 98.0
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 8.1e-46 186.8 100 97.0
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.1e-45 184.9 100 96.0
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 6.0e-41 170.6 100 87.0
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 9.6e-23 110.2 100 63.0
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 4.8e-22 107.8 103 63.1
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 8.1e-22 107.1 101 63.4
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 3.1e-21 105.1 99 60.6
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 6.9e-21 104.0 105 59.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 9.0e-21 103.6 101 62.4
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 9.0e-21 103.6 101 62.4
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.0e-20 102.4 100 61.0
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.6e-20 102.1 100 57.0
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 9.9e-20 100.1 102 59.8
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.8e-19 98.2 100 55.0
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 4.9e-19 97.8 101 55.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 8.4e-19 97.1 102 55.9
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.1e-18 96.7 100 52.0
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.4e-18 96.3 107 53.3
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 5.4e-18 94.4 96 54.2
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 5.4e-18 94.4 94 55.3
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.4e-18 94.4 100 54.0
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 5.4e-18 94.4 107 54.2
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 7.1e-18 94.0 102 53.9
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.6e-17 92.8 100 54.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.6e-17 92.8 103 54.4
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.6e-17 92.8 100 52.0
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.6e-17 92.8 91 54.9
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.1e-17 92.4 93 54.8
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 2.7e-17 92.0 101 56.4
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.7e-17 92.0 101 56.4
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 3.5e-17 91.7 100 55.0
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 3.5e-17 91.7 101 53.5
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 4.6e-17 91.3 100 51.0
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.6e-17 91.3 100 54.0
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 6.0e-17 90.9 100 54.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 1.0e-16 90.1 100 50.0
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 1.3e-16 89.7 100 55.0
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.3e-16 89.0 100 55.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 2.3e-16 89.0 101 53.5
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 3.0e-16 88.6 103 50.5
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 3.9e-16 88.2 99 48.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 6.7e-16 87.4 94 52.1
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.7e-16 87.4 100 52.0
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 8.7e-16 87.0 100 53.0
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.1e-15 86.7 90 51.1
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.5e-15 86.3 101 54.5
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.9e-15 85.9 100 53.0
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.5e-15 85.5 102 53.9
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.3e-15 84.7 101 48.5
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 4.3e-15 84.7 101 51.5
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 9.6e-15 83.6 100 54.0
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.3e-14 83.2 102 52.9
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.3e-14 83.2 102 52.9
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.1e-14 82.4 107 49.5
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.8e-14 82.0 105 48.6
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 3.7e-14 81.6 101 48.5
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 4.8e-14 81.3 101 49.5
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 4.8e-14 81.3 101 52.5
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 8.1e-14 80.5 56 75.0
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 8.1e-14 80.5 97 49.5
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.1e-13 80.1 101 48.5
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.1e-13 80.1 100 48.0
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.4e-13 79.7 96 50.0
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 3.1e-13 78.6 104 51.9
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 5.3e-13 77.8 96 53.1
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 5.3e-13 77.8 92 47.8
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 5.3e-13 77.8 102 48.0
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 5.3e-13 77.8 97 47.4
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 9.0e-13 77.0 107 46.7
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.2e-12 76.6 101 48.5
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 1.2e-12 76.6 100 49.0
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.5e-12 76.3 99 44.4
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.0e-12 75.9 100 48.0
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 2.6e-12 75.5 97 45.4
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 2.6e-12 75.5 97 45.4
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 2.6e-12 75.5 97 45.4
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.4e-12 75.1 99 46.5
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 3.4e-12 75.1 100 45.0
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 4.5e-12 74.7 99 45.5
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 4.5e-12 74.7 91 49.5
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 4.5e-12 74.7 103 47.6
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 4.5e-12 74.7 54 68.5
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 5.8e-12 74.3 99 43.4
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 5.8e-12 74.3 99 43.4
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 5.8e-12 74.3 99 43.4
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 7.6e-12 73.9 99 46.5
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 7.6e-12 73.9 97 43.3
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 7.6e-12 73.9 97 43.3
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.0e-11 73.6 99 45.5
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.3e-11 73.2 99 46.5
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.7e-11 72.8 102 46.1
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 4.9e-11 71.2 99 45.5
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 4.9e-11 71.2 99 45.5
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 6.5e-11 70.9 102 46.1
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 8.4e-11 70.5 81 49.4
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.9e-10 69.3 102 44.1
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.9e-10 69.3 102 46.1
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.5e-10 68.9 101 45.5
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 4.2e-10 68.2 100 46.0
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 4.2e-10 68.2 92 44.6
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 4.2e-10 68.2 105 43.8
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 4.2e-10 68.2 57 61.4
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 9.3e-10 67.0 65 63.1
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 9.3e-10 67.0 102 41.2
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 9.3e-10 67.0 104 44.2
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.7e-09 65.5 108 42.6
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.7e-09 65.5 90 43.3
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 6.0e-09 64.3 94 45.7
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 7.9e-09 63.9 51 64.7
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 7.9e-09 63.9 100 44.0
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 7.9e-09 63.9 97 43.3
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 1.0e-08 63.5 79 49.4
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 3.0e-08 62.0 99 41.4
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 3.0e-08 62.0 102 46.1
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.1e-08 61.2 90 43.3
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 6.7e-08 60.8 80 46.2
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 8.7e-08 60.5 104 37.5
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-07 59.7 99 39.4
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-07 59.7 99 39.4
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.5e-07 59.7 99 39.4
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 1.5e-07 59.7 101 39.6
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 1.5e-07 59.7 53 54.7
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.9e-07 59.3 99 39.4
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.9e-07 59.3 99 39.4
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 1.9e-07 59.3 97 43.3
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 4.3e-07 58.2 69 52.2
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 7.4e-07 57.4 99 36.4
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 7.4e-07 57.4 66 50.0
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 1.3e-06 56.6 58 55.2
AUR62037560 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.3e-06 56.6 104 37.5
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 1.3e-06 56.6 109 38.5
MELO3C035718.2 Cucumis melo HOM05D005059 ORTHO05D004248 1.6e-06 56.2 108 37.0
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 2.8e-06 55.5 53 58.5
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 2.8e-06 55.5 82 46.3
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 3.7e-06 55.1 102 42.2
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 8.2e-06 53.9 57 56.1


User provided reference genes

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