Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0375 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-127 458.8 214 100.0
FvH4_3g42360 Fragaria vesca HOM05D000007 ORTHO05D000017 3.8e-101 371.7 230 80.9
FAN11G0597 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.8e-101 371.7 230 80.9
FAN28G1795 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.8e-101 371.7 230 80.9
FAN21G0381 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-76 290.4 205 72.2
RcHm_v2.0_Chr5g0076141 Rosa chinensis HOM05D000007 ORTHO05D000017 8.8e-50 201.1 235 49.8
RcHm_v2.0_Chr5g0076091 Rosa chinensis HOM05D000007 ORTHO05D000017 2.3e-45 186.4 241 45.2
RcHm_v2.0_Chr5g0076061 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-44 183.3 241 45.6
FvH4_3g42450 Fragaria vesca HOM05D000007 ORTHO05D000017 6.1e-43 178.3 243 46.1
RcHm_v2.0_Chr5g0076101 Rosa chinensis HOM05D000007 ORTHO05D000017 4.0e-42 175.6 254 44.9
RcHm_v2.0_Chr5g0076031 Rosa chinensis HOM05D000007 ORTHO05D000017 3.4e-41 172.6 243 45.3
RcHm_v2.0_Chr5g0075931 Rosa chinensis HOM05D000007 ORTHO05D000017 4.4e-41 172.2 238 42.4
RcHm_v2.0_Chr5g0075921 Rosa chinensis HOM05D000007 ORTHO05D000017 5.7e-41 171.8 225 44.4
RcHm_v2.0_Chr5g0076131 Rosa chinensis HOM05D000007 ORTHO05D000017 4.1e-39 165.6 242 44.2
RcHm_v2.0_Chr1g0380601 Rosa chinensis HOM05D000007 ORTHO05D000017 2.0e-38 163.3 240 43.3
RcHm_v2.0_Chr7g0226441 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-37 160.2 232 42.7
RcHm_v2.0_Chr7g0226431 Rosa chinensis HOM05D000007 ORTHO05D000017 3.9e-37 159.1 236 41.9
RcHm_v2.0_Chr1g0361131 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-36 156.8 246 40.7
RcHm_v2.0_Chr1g0380591 Rosa chinensis HOM05D000007 ORTHO05D000017 2.1e-35 153.3 240 39.2
FvH4_3g42321 Fragaria vesca HOM05D000007 ORTHO05D000017 6.8e-34 148.3 250 39.6
FAN11G0172 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.0e-33 146.7 250 39.6
RcHm_v2.0_Chr7g0226091 Rosa chinensis HOM05D000007 ORTHO05D000017 3.7e-32 142.5 240 38.8
FAN11G3870 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.9e-32 142.1 251 38.6
FvH4_3g42304 Fragaria vesca HOM05D000007 ORTHO05D000017 6.4e-32 141.7 251 38.6
FAN28G0209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.4e-32 141.7 251 38.6
RcHm_v2.0_Chr5g0075691 Rosa chinensis HOM05D000007 ORTHO05D000017 2.7e-30 136.3 230 40.9
FvH4_3g42470 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-28 130.6 238 37.4
RcHm_v2.0_Chr5g0076151 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-28 130.6 255 37.3
FAN16G0234 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-27 126.3 249 36.1
FAN21G3856 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-27 126.3 240 36.7
FAN16G3706 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-26 124.4 240 38.8
FAN18G1100 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-26 124.0 238 36.6
FAN11G1339 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-26 122.9 220 40.0
FAN11G1511 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.9e-26 121.3 220 39.5
RcHm_v2.0_Chr5g0075941 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-25 120.9 236 36.9
FvH4_1g08100 Fragaria vesca HOM05D000007 ORTHO05D000017 3.4e-25 119.4 234 41.0
FAN13G2247 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-24 117.5 238 34.9
FvH4_3g41860 Fragaria vesca HOM05D000007 ORTHO05D025461 3.2e-23 112.8 231 32.0
FAN21G2880 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-22 109.4 237 35.0
RcHm_v2.0_Chr5g0075701 Rosa chinensis HOM05D000007 ORTHO05D025461 2.3e-21 106.7 262 32.1
FvH4_3g42460 Fragaria vesca HOM05D000007 ORTHO05D000017 5.1e-21 105.5 242 34.3
FAN02G3183 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.1e-21 105.5 233 34.3
FAN21G3249 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.3e-20 102.4 231 29.4
FvH4_3g42303 Fragaria vesca HOM05D000007 ORTHO05D000017 7.3e-20 101.7 185 38.4
FAN16G0014 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.1e-19 100.1 93 54.8
FvH4_3g41771 Fragaria vesca HOM05D000007 ORTHO05D000017 6.2e-19 98.6 214 35.5
FAN18G3605 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.2e-19 98.6 201 36.3
FAN25G0715 Fragaria x ananassa HOM05D000007 ORTHO05D025461 6.2e-19 98.6 217 32.3
FvH4_3g42302 Fragaria vesca HOM05D000007 ORTHO05D000017 3.1e-18 96.3 159 42.1
FAN11G3926 Fragaria x ananassa HOM05D000007 ORTHO05D025461 4.0e-18 95.9 222 32.0
Prupe.2G278600 Prunus persica HOM05D000007 ORTHO05D000017 8.9e-18 94.7 246 31.3
FvH4_5g37874 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-17 94.0 166 38.0
Prupe.6G214900 Prunus persica HOM05D000007 ORTHO05D000017 2.6e-17 93.2 236 33.1
FAN08G2632 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.4e-17 92.4 161 37.9
FvH4_3g42301 Fragaria vesca HOM05D000007 ORTHO05D000017 3.8e-16 89.4 144 39.6
FAN18G4057 Fragaria x ananassa HOM05D001729 ORTHO05D001155 8.4e-16 88.2 166 36.7
Prupe.2G278400 Prunus persica HOM05D000007 ORTHO05D000017 2.4e-15 86.7 240 30.4
RcHm_v2.0_Chr7g0226071 Rosa chinensis HOM05D000007 ORTHO05D000017 3.5e-14 82.8 91 47.3
Prupe.6G214700 Prunus persica HOM05D000007 ORTHO05D000017 1.1e-12 77.8 213 32.4
FAN09G0758 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-12 77.4 214 29.4
FAN25G1368 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-12 77.4 122 40.2
Prupe.7G008100 Prunus persica HOM05D000007 ORTHO05D000017 1.5e-12 77.4 221 33.5
CiPaw.07G037800 Carya illinoinensis HOM05D000007 ORTHO05D000017 4.3e-12 75.9 222 27.0
RcHm_v2.0_Chr7g0211081 Rosa chinensis HOM05D000007 ORTHO05D000017 4.3e-12 75.9 199 30.7
RcHm_v2.0_Chr2g0101031 Rosa chinensis HOM05D000007 ORTHO05D000017 5.6e-12 75.5 229 30.6
RcHm_v2.0_Chr3g0475411 Rosa chinensis HOM05D000007 ORTHO05D000017 1.6e-11 73.9 233 28.3
RcHm_v2.0_Chr5g0059291 Rosa chinensis HOM05D000007 ORTHO05D000017 2.1e-11 73.6 170 31.8
Lj3P969T40 Lonicera japonica HOM05D000007 ORTHO05D000017 4.7e-11 72.4 225 28.0
RcHm_v2.0_Chr2g0109761 Rosa chinensis HOM05D000007 ORTHO05D000017 6.2e-11 72.0 241 30.3
FAN16G0648 Fragaria x ananassa HOM05D000308 ORTHO05D000194 1.4e-10 70.9 109 34.9
FAN21G3343 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.8e-10 70.5 97 47.4
RcHm_v2.0_Chr2g0107891 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-10 70.5 230 27.4
RcHm_v2.0_Chr5g0059211 Rosa chinensis HOM05D000007 ORTHO05D000017 2.4e-10 70.1 203 31.0
FAN11G1320 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-10 69.7 166 28.3
RcHm_v2.0_Chr2g0107881 Rosa chinensis HOM05D000007 ORTHO05D000017 5.2e-10 68.9 220 28.2
FvH4_6g47401 Fragaria vesca HOM05D000007 ORTHO05D046000 6.9e-10 68.6 159 34.0
FAN21G0929 Fragaria x ananassa HOM05D000007 ORTHO05D025461 8.9e-10 68.2 97 42.3
Thecc.04G270100 Theobroma cacao HOM05D000007 ORTHO05D000017 8.9e-10 68.2 104 43.3
RcHm_v2.0_Chr2g0107851 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-09 67.4 235 26.4
FvH4_1g18480 Fragaria vesca HOM05D000007 ORTHO05D000017 2.0e-09 67.0 105 41.0
FAN10G2566 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.0e-09 67.0 152 33.6
FAN03G1705 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.6e-09 66.6 147 34.7
PGR004G2543 Punica granatum HOM05D000007 ORTHO05D000017 3.4e-09 66.2 168 31.5
FAN10G3975 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.4e-09 65.9 152 33.6
Lj3C809T2 Lonicera japonica HOM05D000007 ORTHO05D000017 4.4e-09 65.9 180 26.7
Glyma.06G197200 Glycine max HOM05D000007 ORTHO05D000017 5.8e-09 65.5 221 24.9
FvH4_3g32350 Fragaria vesca HOM05D000007 ORTHO05D000017 7.6e-09 65.1 186 30.6
Glyma.08G252000 Glycine max HOM05D000007 ORTHO05D000017 7.6e-09 65.1 170 34.1
FvH4_3g33320 Fragaria vesca HOM05D000007 ORTHO05D000017 9.9e-09 64.7 172 29.1
CiPaw.07G037900 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.3e-08 64.3 190 29.5
FAN11G2267 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-08 64.3 172 29.7
Lj3P918T26 Lonicera japonica HOM05D000007 ORTHO05D000017 1.3e-08 64.3 238 28.6
RcHm_v2.0_Chr2g0109731 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-08 63.9 103 41.7
FAN14G3996 Fragaria x ananassa HOM05D000007 ORTHO05D046000 3.8e-08 62.8 101 38.6
Nitab4.5_0000191g0070 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.8e-08 62.8 229 28.8
Cfa000091 Carpinus fangiana HOM05D000007 ORTHO05D000017 4.9e-08 62.4 187 29.4
FAN14G1591 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.9e-08 62.4 234 26.1
Prupe.6G214600 Prunus persica HOM05D000007 ORTHO05D000017 4.9e-08 62.4 222 32.4
Lsat_1_v5_gn_4_143700 Lactuca sativa HOM05D000007 ORTHO05D000017 6.4e-08 62.0 221 31.2
MD09G1144400 Malus domestica HOM05D000007 ORTHO05D000017 6.4e-08 62.0 221 28.1
Haze_06947 Corylus avellana HOM05D000007 ORTHO05D000017 1.1e-07 61.2 205 32.2
Medtr4g117770 Medicago truncatula HOM05D000007 ORTHO05D000017 1.1e-07 61.2 181 27.1
Medtr4g117810 Medicago truncatula HOM05D000007 ORTHO05D000017 1.1e-07 61.2 181 27.1
Haze_06942 Corylus avellana HOM05D000007 ORTHO05D000017 1.4e-07 60.8 103 35.9
Phvul.003G084100 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 1.4e-07 60.8 175 26.9
RcHm_v2.0_Chr7g0226081 Rosa chinensis HOM05D000007 ORTHO05D000017 1.4e-07 60.8 76 48.7
CAN.G1096.1 Capsicum annuum HOM05D000007 ORTHO05D000017 1.9e-07 60.5 231 26.4
Ciclev10011877m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.9e-07 60.5 116 39.7
Ciclev10013324m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.9e-07 60.5 104 42.3
Ciclev10030112m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.9e-07 60.5 187 26.7
Haze_06950 Corylus avellana HOM05D000007 ORTHO05D000017 1.9e-07 60.5 184 29.3
FAN25G2493 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.9e-07 60.5 157 29.9
QL05p069347 Quercus lobata HOM05D000007 ORTHO05D000017 1.9e-07 60.5 104 37.5
FvH4_2g36701 Fragaria vesca HOM05D000007 ORTHO05D000017 2.4e-07 60.1 234 26.5
FvH4_3g40660 Fragaria vesca HOM05D000007 ORTHO05D000017 2.4e-07 60.1 106 32.1
FvH4_6g40070 Fragaria vesca HOM05D000027 ORTHO05D000066 2.4e-07 60.1 186 26.3
FAN16G3614 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-07 60.1 106 32.1
Manes.15G021000 Manihot esculenta HOM05D000007 ORTHO05D000017 2.4e-07 60.1 217 27.2
Medtr4g117720 Medicago truncatula HOM05D000007 ORTHO05D000017 2.4e-07 60.1 99 36.4
RcHm_v2.0_Chr5g0059111 Rosa chinensis HOM05D000007 ORTHO05D000017 2.4e-07 60.1 204 29.9
FvH4_3g01100 Fragaria vesca HOM05D000007 ORTHO05D000017 3.2e-07 59.7 152 32.2
Glyma.06G126800 Glycine max HOM05D000007 ORTHO05D000017 3.2e-07 59.7 100 36.0
Lj3P804T22 Lonicera japonica HOM05D000007 ORTHO05D000017 3.2e-07 59.7 243 28.4
RcHm_v2.0_Chr2g0109771 Rosa chinensis HOM05D000007 ORTHO05D000017 3.2e-07 59.7 102 37.3
COL.COLO4_18783 Corchorus olitorius HOM05D000007 ORTHO05D000017 4.2e-07 59.3 151 28.5
DCAR_019956 Daucus carota HOM05D000007 ORTHO05D000017 4.2e-07 59.3 227 27.8
FvH4_2g05890 Fragaria vesca HOM05D020036 ORTHO05D013322 4.2e-07 59.3 103 35.9
FAN24G2623 Fragaria x ananassa HOM05D020036 ORTHO05D013322 4.2e-07 59.3 103 35.9
TWI34G0359 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 4.2e-07 59.3 150 30.7
FAN11G2499 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.4e-07 58.9 106 32.1
HanXRQChr02g0058201 Helianthus annuus HOM05D000007 ORTHO05D000017 5.4e-07 58.9 97 36.1
Lj5g0024418 Lotus japonicus HOM05D000007 ORTHO05D000017 5.4e-07 58.9 101 38.6
AT3G06240 Arabidopsis thaliana HOM05D000007 ORTHO05D000017 7.1e-07 58.5 100 37.0
Dinv44466 Davidia involucrata HOM05D000007 ORTHO05D000017 7.1e-07 58.5 222 27.5
HanXRQChr09g0258071 Helianthus annuus HOM05D000007 ORTHO05D000017 7.1e-07 58.5 228 28.5
RcHm_v2.0_Chr2g0086061 Rosa chinensis HOM05D000007 ORTHO05D013322 9.3e-07 58.2 102 36.3
RcHm_v2.0_Chr2g0107811 Rosa chinensis HOM05D000007 ORTHO05D000017 9.3e-07 58.2 99 38.4
PGSC0003DMG400013111 Solanum tuberosum HOM05D000007 ORTHO05D000017 9.3e-07 58.2 175 29.7
CSS0050410 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.2e-06 57.8 103 41.7
RcHm_v2.0_Chr5g0059201 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-06 57.8 205 30.7
Ciclev10013838m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.6e-06 57.4 103 35.9
FAN01G1469 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-06 57.4 121 31.4
PSO210G7474 Papaver somniferum HOM05D000007 ORTHO05D000017 1.6e-06 57.4 97 41.2
RcHm_v2.0_Chr5g0061011 Rosa chinensis HOM05D000007 ORTHO05D000017 1.6e-06 57.4 117 33.3
Carub.0003s0567 Capsella rubella HOM05D000007 ORTHO05D000017 2.1e-06 57.0 100 37.0
Haze_14521 Corylus avellana HOM05D000007 ORTHO05D000039 2.1e-06 57.0 101 39.6
Medtr5g070088 Medicago truncatula HOM05D000007 ORTHO05D000017 2.1e-06 57.0 109 35.8
Peaxi162Scf00009g02613 Petunia axillaris HOM05D000007 ORTHO05D000017 2.1e-06 57.0 110 33.6
Cfa007563 Carpinus fangiana HOM05D000513 ORTHO05D005338 2.7e-06 56.6 101 37.6
Ciclev10033474m.g Citrus clementina HOM05D000007 ORTHO05D000017 2.7e-06 56.6 105 37.1
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.7e-06 56.6 189 24.9
Lj5g0014558 Lotus japonicus HOM05D000007 ORTHO05D000017 2.7e-06 56.6 102 37.3
CSS0038812 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 3.5e-06 56.2 103 40.8
FvH4_3g33531 Fragaria vesca HOM05D000007 ORTHO05D000017 3.5e-06 56.2 119 31.1
HanXRQChr08g0217161 Helianthus annuus HOM05D000007 ORTHO05D000039 3.5e-06 56.2 239 24.7
RcHm_v2.0_Chr2g0086041 Rosa chinensis HOM05D000007 ORTHO05D013322 3.5e-06 56.2 113 35.4
FAN11G1679 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.6e-06 55.8 82 42.7
FAN12G1497 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.6e-06 55.8 105 36.2
FAN28G2988 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.6e-06 55.8 82 42.7
RcHm_v2.0_Chr5g0030151 Rosa chinensis HOM05D000007 ORTHO05D000017 4.6e-06 55.8 97 34.0
Sopen09g032020 Solanum pennellii HOM05D000007 ORTHO05D000017 4.6e-06 55.8 120 32.5
VMungo1215G3363 Vigna mungo HOM05D000007 ORTHO05D000017 4.6e-06 55.8 99 38.4
Ciclev10030174m.g Citrus clementina HOM05D000007 ORTHO05D000017 6.0e-06 55.5 157 31.2
Duzib192G0105 Durio zibethinus HOM05D000007 ORTHO05D000017 6.0e-06 55.5 178 30.3
FvH4_4g30361 Fragaria vesca HOM05D000007 ORTHO05D000017 6.0e-06 55.5 105 36.2
HanXRQChr08g0217091 Helianthus annuus HOM05D000007 ORTHO05D000039 6.0e-06 55.5 166 26.5
HanXRQChr17g0569311 Helianthus annuus HOM05D000007 ORTHO05D000017 6.0e-06 55.5 239 24.3
PSO782G2119 Papaver somniferum HOM05D000007 ORTHO05D000017 6.0e-06 55.5 102 34.3
PGR004G1883 Punica granatum HOM05D000007 ORTHO05D000017 6.0e-06 55.5 201 27.4
Atru.chr3.3207 Acer truncatum HOM05D000007 ORTHO05D000017 7.8e-06 55.1 102 40.2
AL3G17100 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 7.8e-06 55.1 101 35.6
MD09G1144500 Malus domestica HOM05D000007 ORTHO05D000017 7.8e-06 55.1 106 37.7
RhsimUnG0121900 Rhododendron simsii HOM05D000007 ORTHO05D000017 7.8e-06 55.1 227 26.0
VMungo1309G0382 Vigna mungo HOM05D000007 ORTHO05D000017 7.8e-06 55.1 106 34.0


User provided reference genes

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