Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.0e-225 784.3 437 100.0
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.5e-218 761.1 437 97.5
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.7e-218 760.4 437 97.5
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.7e-217 759.2 437 96.8
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.0e-206 721.8 437 93.4
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.6e-186 654.8 378 97.1
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 5.6e-184 647.9 438 84.5
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 4.7e-183 644.8 438 83.1
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 6.6e-161 571.2 439 76.3
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 5.3e-158 561.6 438 74.2
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-157 558.9 325 97.2
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.7e-154 549.3 437 73.0
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 3.9e-153 545.4 437 72.5
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 5.6e-152 541.6 448 71.2
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 7.4e-152 541.2 451 69.6
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.1e-151 539.7 451 69.0
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 6.2e-151 538.1 451 71.4
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 6.2e-151 538.1 448 69.2
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 3.1e-150 535.8 429 74.6
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.1e-150 535.8 448 69.0
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 4.9e-148 528.5 448 67.9
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 9.3e-147 524.2 449 69.3
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.6e-146 523.5 438 70.5
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.6e-146 523.5 448 68.8
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 7.9e-146 521.2 449 68.4
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.0e-145 520.8 445 69.2
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.0e-145 520.8 449 66.8
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.3e-145 520.4 438 68.3
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.3e-145 520.4 451 67.4
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.3e-145 520.4 451 67.4
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.8e-145 520.0 449 69.3
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.8e-145 520.0 467 66.8
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 1.5e-144 516.9 438 66.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 3.3e-144 515.8 437 65.7
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 5.7e-144 515.0 445 68.8
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.4e-142 510.4 438 67.8
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 4.0e-142 508.8 315 92.1
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 5.3e-142 508.4 436 67.9
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.3e-142 508.4 414 72.2
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 6.9e-142 508.1 442 64.7
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 2.0e-141 506.5 440 66.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 2.2e-140 503.1 439 65.8
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 8.4e-140 501.1 443 67.0
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.1e-139 500.7 449 65.5
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-139 500.0 391 76.7
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 3.2e-139 499.2 446 65.0
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 3.2e-139 499.2 441 66.4
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 5.5e-139 498.4 440 65.0
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.2e-138 497.3 432 66.0
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.2e-138 497.3 440 67.0
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 3.5e-138 495.7 439 65.1
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 6.1e-138 495.0 450 66.0
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.3e-137 493.8 446 63.7
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 2.3e-137 493.0 438 67.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 2.3e-137 493.0 456 62.9
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.5e-136 490.3 456 64.7
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 4.3e-136 488.8 447 64.0
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 5.7e-136 488.4 445 65.4
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 7.4e-136 488.0 450 64.2
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 7.4e-136 488.0 456 63.6
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 9.7e-136 487.6 438 65.5
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 9.7e-136 487.6 435 67.4
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 1.6e-135 486.9 448 62.1
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.2e-135 486.5 443 64.6
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.2e-135 486.5 440 64.3
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 3.7e-135 485.7 433 67.4
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 4.8e-135 485.3 435 67.6
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.1e-134 484.2 443 65.9
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.8e-134 483.4 427 66.7
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 6.9e-134 481.5 446 63.9
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.2e-133 480.7 450 66.0
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 1.5e-133 480.3 455 62.4
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 2.0e-133 479.9 448 62.9
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.6e-133 479.6 435 66.7
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 3.4e-133 479.2 443 64.1
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 2.9e-132 476.1 440 65.0
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 8.5e-132 474.6 435 65.5
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 2.5e-131 473.0 443 64.8
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 4.2e-131 472.2 450 63.8
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 5.5e-131 471.9 451 62.7
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.6e-130 468.8 445 63.6
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 6.1e-130 468.4 446 62.1
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.5e-128 463.8 440 62.5
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 2.0e-128 463.4 436 63.5
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.3e-127 460.7 427 64.4
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.3e-127 460.7 427 64.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 6.3e-127 458.4 446 63.5
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 4.5e-125 452.2 692 47.4
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 7.7e-125 451.4 447 61.3
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.0e-124 451.1 436 62.6
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 9.4e-123 444.5 441 62.8
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.1e-122 443.4 412 63.6
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 2.6e-120 436.4 271 90.4
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 9.7e-120 434.5 405 62.2
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 2.6e-117 426.4 478 56.3
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 7.7e-117 424.9 440 60.0
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 3.8e-116 422.5 436 61.7
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 6.1e-114 415.2 436 60.8
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.1e-102 376.3 459 51.6
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 3.2e-99 366.3 358 64.0
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.5e-96 357.5 365 58.4
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.7e-95 354.0 441 51.2
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.1e-94 351.3 432 51.9
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.3e-92 343.6 380 56.1
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 9.5e-91 338.2 456 48.2
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.7e-90 335.9 418 51.4
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.7e-84 317.4 422 49.8
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.3e-84 317.0 463 47.1
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 9.5e-83 311.6 456 46.1
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 3.7e-79 299.7 400 48.5
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.3e-75 285.4 278 59.7
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 5.4e-70 269.2 249 69.1
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.5e-67 260.4 308 57.8
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 5.6e-67 259.2 247 62.3
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 9.5e-67 258.5 322 54.0
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.7e-63 247.7 224 67.4
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.7e-63 246.5 168 83.9
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 3.2e-62 243.4 359 50.1
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 4.6e-61 239.6 217 64.5
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.6e-58 231.1 276 57.6
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.0e-56 224.2 191 70.7
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 2.4e-54 217.2 179 65.4
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 4.2e-54 216.5 149 83.2
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 2.9e-47 193.7 378 36.2
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.3e-44 184.9 364 38.5
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.9e-43 181.0 443 35.0
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.1e-41 173.7 144 68.8
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.5e-40 169.9 166 63.9
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.7e-39 167.9 273 44.7
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 2.4e-38 164.1 134 71.6
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 5.5e-38 162.9 462 31.4
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 7.1e-38 162.5 92 95.7
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 6.0e-37 159.5 127 73.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 7.6e-24 115.9 203 43.8
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 1.7e-23 114.8 68 92.6
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 6.5e-23 112.8 147 52.4
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.6e-18 98.2 60 88.3
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.8e-18 97.4 107 59.8
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-15 88.6 95 58.9
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 4.6e-13 80.1 189 38.6
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 2.2e-10 71.2 37 97.3
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 2.8e-10 70.9 170 38.2
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 5.5e-06 56.6 167 28.7


User provided reference genes

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