Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 2.7e-52 208.4 105 100.0
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.7e-52 208.4 105 100.0
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.0e-51 206.5 105 99.0
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.0e-51 206.5 105 99.0
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.9e-51 204.5 105 98.1
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 9.0e-48 193.4 103 93.2
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.0e-48 193.4 103 93.2
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.0e-48 193.4 103 93.2
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 2.0e-47 192.2 102 93.1
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 5.9e-47 190.7 103 90.3
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 5.9e-47 190.7 102 92.2
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 7.7e-47 190.3 99 94.9
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.0e-46 189.9 103 90.3
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.3e-46 189.5 102 89.2
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.9e-46 188.3 102 88.2
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 3.8e-46 188.0 102 89.2
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 5.0e-46 187.6 103 89.3
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 5.0e-46 187.6 103 89.3
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.9e-45 185.7 102 87.3
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 2.5e-45 185.3 101 89.1
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 5.5e-45 184.1 99 89.9
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 9.4e-45 183.3 103 85.4
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 9.4e-45 183.3 103 85.4
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.2e-44 183.0 100 88.0
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 1.2e-44 183.0 106 85.8
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.7e-44 181.8 100 89.0
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 2.7e-44 181.8 98 89.8
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 2.7e-44 181.8 103 87.4
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 3.6e-44 181.4 99 87.9
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 3.6e-44 181.4 102 86.3
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 3.6e-44 181.4 102 87.3
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 3.6e-44 181.4 101 88.1
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 4.6e-44 181.0 102 85.3
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.6e-44 181.0 100 87.0
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 7.9e-44 180.3 103 85.4
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 1.0e-43 179.9 102 85.3
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.0e-43 179.9 99 86.9
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.0e-43 179.9 102 85.3
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 1.4e-43 179.5 98 87.8
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.4e-43 179.5 102 84.3
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.4e-43 179.5 102 85.3
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.4e-43 179.5 103 84.5
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.4e-43 179.5 102 84.3
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.4e-43 179.5 100 86.0
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.8e-43 179.1 99 86.9
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 2.3e-43 178.7 102 84.3
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 2.3e-43 178.7 101 85.1
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 2.3e-43 178.7 102 84.3
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 3.0e-43 178.3 99 86.9
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 3.0e-43 178.3 103 86.4
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 3.0e-43 178.3 97 88.7
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 3.0e-43 178.3 102 84.3
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 3.0e-43 178.3 103 86.4
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 3.9e-43 177.9 100 85.0
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 5.1e-43 177.6 102 84.3
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 6.7e-43 177.2 103 85.4
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 8.8e-43 176.8 105 85.7
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 8.8e-43 176.8 105 85.7
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 8.8e-43 176.8 105 85.7
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-42 176.4 98 86.7
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-42 176.4 98 86.7
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.1e-42 176.4 98 86.7
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.1e-42 176.4 98 86.7
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.1e-42 176.4 98 86.7
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.1e-42 176.4 98 86.7
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.1e-42 176.4 98 86.7
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 1.5e-42 176.0 102 86.3
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 1.5e-42 176.0 99 86.9
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.0e-42 175.6 102 86.3
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 2.5e-42 175.3 98 85.7
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 2.5e-42 175.3 98 85.7
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 2.5e-42 175.3 98 85.7
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 2.5e-42 175.3 102 85.3
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 3.3e-42 174.9 98 85.7
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 3.3e-42 174.9 103 85.4
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 3.3e-42 174.9 103 85.4
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 4.3e-42 174.5 98 85.7
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 5.7e-42 174.1 98 83.7
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 7.4e-42 173.7 100 89.0
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 7.4e-42 173.7 99 82.8
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.2e-41 172.2 99 84.8
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.2e-41 172.2 99 84.8
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 2.8e-41 171.8 98 83.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 3.7e-41 171.4 98 82.7
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 3.7e-41 171.4 98 82.7
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.8e-41 171.0 99 83.8
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 6.3e-41 170.6 99 86.9
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 6.3e-41 170.6 96 86.5
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 6.3e-41 170.6 99 84.8
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 6.3e-41 170.6 99 84.8
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 8.2e-41 170.2 100 88.0
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 1.1e-40 169.9 98 84.7
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 1.1e-40 169.9 103 81.6
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 1.1e-40 169.9 103 81.6
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.1e-40 169.9 103 81.6
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.1e-40 169.9 103 80.6
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.1e-40 169.9 103 81.6
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.4e-40 169.5 103 80.6
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-40 169.5 99 84.8
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 6.9e-40 167.2 95 84.2
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 6.9e-40 167.2 103 80.6
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.5e-39 166.0 97 84.5
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 3.4e-39 164.9 99 81.8
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 4.5e-39 164.5 91 91.2
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.3e-38 162.9 102 77.5
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.2e-38 162.2 102 79.4
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 2.9e-38 161.8 97 83.5
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 3.8e-38 161.4 99 79.8
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 3.8e-38 161.4 99 79.8
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 5.0e-38 161.0 93 88.2
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.1e-37 159.8 156 56.4
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 3.2e-37 158.3 102 78.4
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 7.2e-37 157.1 85 88.2
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 1.6e-36 156.0 103 79.6
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 3.6e-36 154.8 103 72.8
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.4e-35 152.9 97 79.4
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.8e-35 152.5 99 76.8
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 2.3e-35 152.1 101 73.3
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 5.1e-35 151.0 91 81.3
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 6.7e-35 150.6 88 83.0
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 7.0e-32 140.6 227 41.0
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 9.1e-32 140.2 90 81.1
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 9.1e-32 140.2 102 69.6
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.7e-30 136.0 77 88.3
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.7e-25 119.4 71 80.3
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 3.7e-25 118.2 106 56.6
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 3.1e-24 115.2 101 55.4
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 5.3e-24 114.4 66 87.9
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 8.5e-22 107.1 65 83.1
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.1e-21 106.7 65 80.0
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 4.7e-20 101.3 88 62.5
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 1.8e-19 99.4 62 77.4
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 1.8e-19 99.4 62 77.4
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 3.0e-19 98.6 65 76.9
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 7.5e-18 94.0 94 51.1
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.7e-14 82.8 37 100.0
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 2.2e-14 82.4 38 97.4
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 8.5e-14 80.5 37 97.3
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.9e-13 79.3 38 94.7
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 2.5e-13 79.0 38 94.7
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 8.0e-12 73.9 109 39.4
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 2.3e-11 72.4 38 89.5
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 1.4e-08 63.2 34 85.3
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 1.8e-08 62.8 33 87.9


User provided reference genes

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