Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 9.0e-237 823.2 405 100.0
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 9.0e-237 823.2 405 100.0
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.5e-228 795.8 447 89.5
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 7.9e-225 783.5 470 85.5
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 4.3e-223 777.7 485 82.9
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 6.3e-222 773.9 466 84.8
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 9.3e-218 760.0 449 85.1
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 1.4e-210 736.1 439 84.5
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 1.4e-208 729.6 439 84.3
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 3.2e-202 708.4 440 80.9
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.0e-200 703.4 444 80.0
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.3e-198 696.4 434 80.6
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 1.3e-198 696.4 450 78.2
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 3.7e-198 694.9 406 84.0
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 1.4e-197 693.0 450 78.0
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.7e-195 686.0 434 79.5
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 2.2e-195 685.6 430 80.5
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 6.5e-195 684.1 436 77.3
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 4.2e-194 681.4 436 77.5
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 4.2e-194 681.4 440 78.2
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 4.2e-194 681.4 430 79.3
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 5.5e-194 681.0 435 79.3
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 9.4e-194 680.2 442 76.9
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 4.7e-193 677.9 439 76.8
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 6.1e-193 677.6 447 76.7
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 6.1e-193 677.6 434 77.6
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 8.0e-193 677.2 440 77.7
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.0e-192 676.8 434 77.0
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.4e-192 676.4 425 80.0
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 1.4e-192 676.4 425 80.0
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 3.0e-192 675.2 442 76.0
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 5.2e-192 674.5 425 79.5
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 5.2e-192 674.5 443 75.4
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 2.0e-191 672.5 445 74.6
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 5.7e-191 671.0 446 75.8
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-190 669.8 430 76.5
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 1.3e-190 669.8 436 77.1
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 2.8e-190 668.7 430 76.3
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 2.8e-190 668.7 447 74.9
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 4.8e-190 667.9 391 82.4
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 6.3e-190 667.5 417 80.3
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 1.8e-189 666.0 443 76.3
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 3.1e-189 665.2 436 75.2
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 1.2e-188 663.3 442 75.1
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 1.2e-188 663.3 438 74.4
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 1.6e-188 662.9 430 75.6
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 4.5e-188 661.4 434 75.8
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 5.9e-188 661.0 438 74.7
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 7.7e-188 660.6 418 78.5
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 1.7e-187 659.4 445 73.9
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 2.9e-187 658.7 427 76.6
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 8.5e-187 657.1 373 84.7
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 1.1e-186 656.8 451 73.6
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 1.5e-186 656.4 445 73.7
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 2.5e-186 655.6 430 76.0
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 1.2e-185 653.3 430 74.9
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 1.6e-185 652.9 422 77.7
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 2.1e-185 652.5 427 76.3
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 2.1e-185 652.5 494 69.0
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 3.6e-185 651.7 441 74.1
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 1.0e-184 650.2 444 73.4
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 1.4e-184 649.8 435 74.3
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 1.8e-184 649.4 432 75.9
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 2.3e-184 649.0 427 76.1
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 2.3e-184 649.0 432 75.7
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 3.0e-184 648.7 427 74.9
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 3.0e-184 648.7 447 73.6
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.0e-184 648.7 433 74.4
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 5.2e-184 647.9 431 74.7
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.2e-183 646.7 450 72.4
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 5.7e-183 644.4 426 75.8
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 4.8e-182 641.3 432 75.0
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 6.3e-182 641.0 450 71.8
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 1.1e-181 640.2 418 77.0
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 1.4e-181 639.8 432 73.8
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 2.4e-181 639.0 418 76.8
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 4.1e-181 638.3 418 76.6
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 4.1e-181 638.3 418 76.6
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 5.9e-180 634.4 432 72.5
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 1.7e-179 632.9 375 82.7
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 2.3e-179 632.5 414 76.8
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 3.8e-179 631.7 434 72.1
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 9.5e-178 627.1 407 77.6
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 2.1e-177 625.9 433 73.0
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.4e-176 623.2 512 64.5
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 1.5e-175 619.8 405 77.5
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.5e-175 619.8 419 74.9
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 2.6e-175 619.0 426 73.0
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 3.4e-175 618.6 426 73.7
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 4.4e-175 618.2 436 70.9
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 9.8e-175 617.1 426 72.8
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.3e-174 616.7 396 76.5
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 2.8e-174 615.5 436 71.1
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 4.9e-174 614.8 436 70.2
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 2.7e-172 609.0 423 72.8
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 5.9e-172 607.8 388 78.9
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 6.6e-171 604.4 398 76.4
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.2e-167 593.6 440 68.9
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 2.6e-167 592.4 405 73.8
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 2.6e-167 592.4 387 77.3
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.4e-165 585.9 432 69.0
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.9e-162 576.2 425 71.5
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 1.4e-160 570.1 425 65.2
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 4.0e-160 568.5 424 67.5
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 2.3e-155 552.7 419 64.9
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 4.3e-154 548.5 385 72.7
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.2e-153 547.0 359 77.2
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 4.7e-153 545.0 434 65.4
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 1.5e-146 523.5 377 70.8
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 4.7e-145 518.5 353 75.4
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 6.8e-144 514.6 354 73.4
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 1.2e-143 513.8 423 66.2
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 1.7e-142 510.0 356 73.3
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 2.4e-141 506.1 270 90.0
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 6.2e-137 491.5 425 58.1
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 5.2e-136 488.4 393 65.4
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 6.4e-134 481.5 270 87.8
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 5.1e-131 471.9 268 86.9
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 5.4e-125 451.8 316 74.4
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.9e-122 443.4 302 79.5
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 1.2e-119 434.1 231 90.5
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 4.2e-117 425.6 232 89.2
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 2.7e-116 422.9 340 62.9
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.5e-111 407.1 234 85.9
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 2.9e-110 402.9 228 84.6
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 8.4e-110 401.4 440 49.5
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 3.9e-107 392.5 249 81.1
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.5e-101 372.1 287 73.5
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 9.4e-101 371.3 448 44.2
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 2.4e-96 356.7 331 62.2
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 9.1e-96 354.8 464 43.3
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 3.4e-95 352.8 196 87.2
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-91 341.3 269 68.8
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 2.0e-90 337.0 216 79.2
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 4.4e-90 335.9 189 83.6
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 8.2e-89 331.6 289 62.6
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 1.4e-85 320.9 213 76.1
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 1.4e-83 314.3 431 41.3
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 2.7e-76 290.0 272 59.6
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 4.7e-76 289.3 464 37.7
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 5.4e-64 249.2 199 64.3
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 5.0e-62 242.7 140 82.1
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 3.3e-53 213.4 208 57.2
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 4.3e-53 213.0 208 57.2
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 9.2e-48 195.3 120 72.5
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 1.5e-45 188.0 124 71.8
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 6.2e-44 182.6 197 54.8
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 2.0e-42 177.6 125 66.4
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 1.6e-36 157.9 119 66.4
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 1.6e-36 157.9 119 66.4
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 3.9e-30 136.7 80 77.5
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 2.5e-29 134.0 124 58.9
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 3.4e-26 123.6 81 69.1
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 3.2e-24 117.1 78 65.4
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 1.6e-23 114.8 57 93.0
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 2.1e-23 114.4 105 59.0
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 3.0e-22 110.5 91 61.5
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 3.9e-22 110.2 118 50.0
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 6.2e-20 102.8 74 73.0
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.4e-16 91.7 42 97.6
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.0e-14 85.5 97 50.5
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 1.1e-08 65.5 284 26.8
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 2.1e-07 61.2 280 24.6
THA.LOC104812201 Tarenaya hassleriana HOM05D002124 ORTHO05D004058 1.0e-06 58.9 280 25.4


User provided reference genes

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