Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.3e-254 881.7 434 100.0
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.8e-246 855.5 434 97.5
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 8.7e-246 853.2 434 97.0
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 3.7e-236 821.2 434 94.2
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.3e-233 812.8 434 92.9
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.8e-230 802.4 434 91.0
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 2.8e-228 795.0 434 91.0
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.4e-214 749.6 434 84.8
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-212 743.0 434 83.9
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.8e-211 739.2 434 83.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 9.4e-200 700.3 434 79.7
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.6e-199 699.5 433 79.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.3e-198 695.7 433 77.8
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.0e-198 695.3 434 79.3
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.0e-198 695.3 435 77.9
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 6.7e-198 694.1 435 78.6
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 3.3e-197 691.8 434 77.6
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 4.4e-197 691.4 433 77.6
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 4.4e-197 691.4 433 77.8
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.4e-197 691.4 433 78.3
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.3e-196 689.9 435 77.7
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.7e-196 689.5 434 77.0
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.7e-196 689.5 434 77.9
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 6.3e-196 687.6 434 75.8
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 8.2e-196 687.2 430 77.4
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 3.1e-195 685.3 434 77.0
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 5.3e-195 684.5 378 87.6
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 7.0e-195 684.1 431 76.8
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 9.1e-195 683.7 434 76.0
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.1e-195 683.7 435 76.6
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.6e-194 682.9 433 77.4
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 3.5e-194 681.8 455 75.4
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 4.5e-194 681.4 432 76.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.0e-193 680.2 433 76.4
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.3e-193 679.9 432 75.7
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.7e-193 679.5 432 75.7
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.7e-193 679.5 435 76.3
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.2e-193 679.1 432 75.9
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.2e-193 679.1 434 75.3
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.9e-193 678.7 433 76.2
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.9e-193 678.7 434 75.6
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.9e-193 678.7 433 75.1
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 3.8e-193 678.3 432 75.9
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.8e-193 678.3 435 76.3
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 5.0e-193 677.9 456 73.0
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 5.0e-193 677.9 432 75.2
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 6.5e-193 677.6 434 75.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.5e-193 677.6 433 75.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 8.5e-193 677.2 432 75.7
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 8.5e-193 677.2 430 76.5
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-192 676.8 434 75.6
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.1e-192 676.8 435 76.1
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-192 676.0 434 75.1
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.9e-192 676.0 435 75.4
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.5e-192 675.6 431 76.1
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 4.2e-192 674.9 432 75.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 7.2e-192 674.1 432 74.8
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.2e-191 673.3 432 74.8
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.2e-191 673.3 432 75.2
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.2e-191 673.3 430 75.6
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.2e-191 673.3 435 75.9
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.2e-191 673.3 435 75.6
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.1e-191 672.5 432 76.2
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.1e-191 672.5 437 76.2
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.1e-191 672.5 434 75.8
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.7e-191 672.2 432 76.2
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 4.7e-191 671.4 434 75.3
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 4.7e-191 671.4 435 74.7
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 6.1e-191 671.0 433 76.0
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.0e-190 670.2 433 75.3
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.0e-190 670.2 433 75.3
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.4e-190 669.8 432 75.5
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 2.3e-190 669.1 433 75.1
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 3.0e-190 668.7 434 74.7
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.0e-190 668.3 432 73.8
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 4.0e-190 668.3 430 74.7
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 5.2e-190 667.9 432 74.3
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 5.2e-190 667.9 434 74.7
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.2e-189 666.8 435 73.8
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 9.8e-189 663.7 434 75.3
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.3e-188 663.3 432 73.8
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.3e-188 663.3 435 73.1
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.3e-188 663.3 428 74.5
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.3e-188 663.3 434 74.7
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.7e-188 662.9 450 73.6
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.8e-188 662.1 432 74.8
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.8e-188 662.1 433 74.4
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.8e-188 662.1 434 74.0
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 6.3e-188 661.0 431 74.9
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 2.4e-187 659.1 432 73.8
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 3.1e-187 658.7 433 74.6
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 5.4e-187 657.9 432 75.0
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.4e-187 657.9 447 72.5
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 7.0e-187 657.5 430 73.3
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 7.0e-187 657.5 428 75.2
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 9.1e-187 657.1 432 73.1
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.3e-185 653.3 432 73.1
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.7e-185 652.9 432 72.7
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.0e-185 651.4 432 74.1
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-184 650.2 432 72.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 5.5e-184 647.9 433 73.0
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 7.2e-184 647.5 422 76.8
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 9.5e-184 647.1 432 73.6
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.7e-183 644.8 434 72.6
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 8.0e-183 644.0 432 71.1
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.8e-182 642.9 431 71.2
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 9.8e-181 637.1 457 68.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.1e-179 633.6 426 70.7
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-179 633.3 465 67.5
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.1e-179 632.1 432 71.8
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.0e-178 629.4 433 73.0
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 4.5e-178 628.2 431 70.8
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 1.5e-176 623.2 428 70.8
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 7.3e-176 620.9 428 71.0
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 6.1e-175 617.8 432 69.9
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 6.1e-175 617.8 430 68.8
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.0e-174 617.1 427 69.1
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.4e-174 616.7 429 70.2
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 2.3e-174 615.9 428 69.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.2e-174 614.8 376 79.0
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 5.2e-174 614.8 437 68.9
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 6.8e-174 614.4 428 68.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 5.8e-173 611.3 433 68.6
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-171 607.1 427 70.3
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.4e-171 605.9 433 70.0
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 3.2e-171 605.5 433 70.4
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 4.6e-170 601.7 387 75.7
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 4.6e-170 601.7 436 67.4
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.9e-168 596.3 514 59.5
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 1.9e-168 596.3 437 65.0
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 4.3e-168 595.1 431 69.4
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.4e-163 578.2 429 66.0
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.2e-162 577.0 377 73.5
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 8.3e-156 554.3 357 74.5
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 7.8e-154 547.7 357 73.7
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.1e-150 537.3 429 59.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.9e-148 529.3 431 57.5
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 6.6e-145 518.1 450 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 4.4e-141 505.4 426 57.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.9e-140 502.7 429 60.4
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.9e-140 502.7 427 55.5
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.0e-133 479.9 307 76.5
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 4.5e-133 478.8 442 53.2
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.5e-125 452.2 358 63.1
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-116 424.1 318 69.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-116 423.3 331 65.0
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-108 397.5 239 79.1
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.9e-108 396.4 307 64.8
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.7e-100 370.5 416 45.9
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 3.8e-100 369.4 514 39.7
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 3.1e-94 349.7 419 45.1
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 9.1e-94 348.2 260 65.0
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.0e-93 347.1 442 42.5
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-91 340.9 251 66.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.2e-89 332.4 198 77.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.4e-88 328.6 198 76.8
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 7.5e-72 275.4 246 59.3
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 7.5e-72 275.4 221 62.4
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.0e-65 253.1 162 75.9
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.4e-62 244.6 258 52.3
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.7e-60 237.7 174 64.4
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.1e-57 226.9 179 65.4
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.1e-54 218.4 155 67.1
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-54 218.0 167 65.3
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.2e-53 214.9 245 48.6
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.0e-52 210.3 124 77.4
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.8e-49 201.1 128 76.6
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 8.9e-49 198.7 197 53.8
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.4e-46 191.4 353 36.5
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.7e-44 184.5 121 67.8
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.6e-43 179.5 359 35.9
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.5e-40 171.4 127 66.9
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.5e-35 154.8 122 62.3
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 9.6e-35 152.1 95 75.8
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 6.6e-28 129.4 66 86.4
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-27 128.6 126 55.6
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.9e-27 127.9 88 70.5
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.0e-25 120.2 71 78.9
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 6.0e-13 79.7 57 66.7
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.8e-12 78.2 87 43.7
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 8.7e-12 75.9 98 39.8
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.6e-11 73.2 59 67.8
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 4.5e-08 63.5 303 22.4
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 5.8e-08 63.2 35 77.1
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 7.6e-08 62.8 42 71.4


User provided reference genes

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