Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.5e-98 362.1 177 100.0
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.6e-95 352.1 186 94.1
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.5e-90 336.3 212 81.1
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 1.3e-78 296.6 198 79.3
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 2.7e-68 262.3 194 67.5
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 3.5e-68 261.9 194 67.5
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 3.3e-66 255.4 195 68.2
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 1.6e-65 253.1 194 66.5
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 3.7e-62 241.9 199 64.8
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 2.4e-61 239.2 265 52.1
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 9.2e-61 237.3 192 63.0
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 3.5e-60 235.3 195 64.1
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 1.7e-59 233.0 190 64.7
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 4.3e-58 228.4 189 60.8
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 5.6e-58 228.0 185 63.2
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 9.5e-58 227.3 193 63.7
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.2e-57 226.9 196 61.2
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.6e-57 226.5 197 60.4
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 1.6e-57 226.5 205 59.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 2.1e-57 226.1 194 59.8
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.8e-57 225.7 184 63.6
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 2.8e-57 225.7 184 63.6
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 4.7e-57 224.9 201 60.7
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 6.2e-57 224.6 194 59.8
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 8.1e-57 224.2 191 61.8
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.1e-57 224.2 185 63.8
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.4e-56 223.4 191 61.3
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.8e-56 223.0 189 61.9
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.8e-56 223.0 192 62.0
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 4.0e-56 221.9 191 61.8
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 4.0e-56 221.9 123 91.1
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 4.0e-56 221.9 199 60.3
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 5.2e-56 221.5 194 58.8
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 6.8e-56 221.1 207 56.5
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 6.8e-56 221.1 193 61.7
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 8.9e-56 220.7 196 58.7
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 8.9e-56 220.7 188 63.3
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.2e-55 220.3 212 56.1
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.2e-55 220.3 195 59.0
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.5e-55 219.9 191 60.7
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.5e-55 219.9 125 84.0
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.6e-55 219.2 191 60.7
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 2.6e-55 219.2 195 59.0
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 2.6e-55 219.2 190 60.5
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 3.4e-55 218.8 188 60.6
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 5.8e-55 218.0 192 57.8
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 1.3e-54 216.9 190 61.1
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 1.3e-54 216.9 195 59.5
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 1.7e-54 216.5 194 58.2
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 3.7e-54 215.3 195 57.4
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 6.4e-54 214.5 192 57.8
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 8.3e-54 214.2 202 58.9
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 8.3e-54 214.2 191 58.6
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.4e-53 213.4 192 60.9
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.4e-53 212.6 192 60.4
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 2.4e-53 212.6 193 60.1
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 9.2e-53 210.7 191 58.1
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 1.2e-52 210.3 197 58.4
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.1e-52 209.5 200 56.0
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 2.7e-52 209.1 195 57.4
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 7.8e-52 207.6 228 50.0
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.7e-51 206.5 185 58.9
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.7e-51 206.5 198 57.1
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.7e-51 206.5 191 57.6
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 2.3e-51 206.1 228 50.0
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 4.3e-50 201.8 191 57.6
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 7.3e-50 201.1 191 57.1
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.6e-49 199.9 186 56.5
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.6e-49 199.9 200 54.0
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.8e-49 199.1 191 57.1
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 3.6e-49 198.7 253 47.8
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 6.2e-49 198.0 192 55.2
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.1e-49 197.6 183 57.4
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 1.4e-48 196.8 202 54.0
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 1.4e-48 196.8 184 56.5
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 1.8e-48 196.4 202 53.0
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 3.1e-48 195.7 194 55.7
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 5.2e-48 194.9 200 54.0
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 2.6e-47 192.6 152 67.1
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 3.4e-47 192.2 189 52.4
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 3.4e-47 192.2 124 72.6
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 9.9e-47 190.7 182 54.4
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 4.9e-46 188.3 173 57.8
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 4.9e-46 188.3 123 72.4
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 6.4e-46 188.0 123 71.5
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.1e-45 187.2 182 53.3
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 7.1e-45 184.5 126 70.6
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.2e-44 183.7 184 55.4
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 3.5e-44 182.2 254 43.7
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.3e-43 180.3 123 68.3
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.1e-42 177.2 122 69.7
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 3.3e-42 175.6 177 54.8
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 4.3e-42 175.3 125 64.0
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 1.3e-41 173.7 222 46.8
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 6.2e-41 171.4 195 48.2
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.1e-40 170.6 195 48.2
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.9e-37 159.8 157 58.0
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.6e-36 156.8 201 47.8
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 6.0e-36 154.8 182 46.7
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 1.3e-35 153.7 161 54.0
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 6.6e-35 151.4 224 40.6
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.3e-33 147.1 118 61.0
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 6.2e-33 144.8 114 62.3
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 4.0e-32 142.1 174 44.8
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 4.0e-32 142.1 258 37.2
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 2.0e-31 139.8 160 49.4
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 9.9e-31 137.5 93 67.7
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 9.9e-31 137.5 155 48.4
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 4.6e-28 128.6 113 50.4
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 6.0e-28 128.3 108 51.9
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 6.0e-28 128.3 127 52.8
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.3e-27 127.1 158 47.5
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 2.3e-27 126.3 120 58.3
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 5.6e-26 121.7 137 47.4
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 1.3e-25 120.6 140 50.7
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 5.3e-24 115.2 60 78.3
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 9.0e-24 114.4 110 59.1
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.4e-23 112.5 59 79.7
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 6.5e-22 108.2 110 59.1
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 6.7e-19 98.2 132 46.2
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 6.7e-19 98.2 102 46.1
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.5e-18 96.3 87 50.6
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 2.1e-17 93.2 100 39.0
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 2.1e-17 93.2 120 45.8
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 1.8e-16 90.1 106 39.6
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 4.1e-16 89.0 63 69.8
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 5.8e-15 85.1 110 48.2
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 5.8e-15 85.1 96 43.8
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 2.9e-14 82.8 117 36.8
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 2.5e-13 79.7 112 42.0
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 7.2e-13 78.2 94 39.4
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 4.6e-12 75.5 94 48.9
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.8e-11 73.6 109 40.4
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 1.9e-10 70.1 49 59.2
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.3e-10 69.3 36 77.8
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 3.3e-10 69.3 36 77.8
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 9.7e-10 67.8 104 36.5
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 4.1e-08 62.4 128 28.9
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 5.9e-07 58.5 120 36.7


User provided reference genes

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