Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.1e-129 465.7 229 100.0
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 7.8e-129 463.8 229 98.7
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.7e-128 462.6 229 98.3
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.3e-128 462.2 229 98.3
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 4.7e-126 454.5 229 96.1
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 1.4e-125 453.0 229 96.1
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 5.8e-124 447.6 229 94.3
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 1.3e-123 446.4 229 93.4
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 93.9
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 93.4
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.4
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 93.4
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 92.1
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 92.6
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.0
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.0
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 91.7
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 92.6
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 91.7
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 92.6
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 9.3e-122 440.3 227 91.6
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 9.3e-122 440.3 227 91.6
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 91.7
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 92.6
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 92.1
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 91.7
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 92.1
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 92.6
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 91.7
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.7e-121 438.7 226 92.5
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.7e-121 438.7 226 92.5
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 91.3
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 91.7
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 92.1
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 92.6
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 91.7
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 91.3
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.0e-120 436.8 226 92.0
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 90.8
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.3e-120 436.4 227 90.3
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.7e-120 436.0 229 91.7
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 1.7e-120 436.0 229 91.3
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 2.3e-120 435.6 227 92.1
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.0e-120 435.3 229 91.3
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.9e-120 434.9 227 91.6
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.9e-120 434.9 229 89.5
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 5.1e-120 434.5 229 90.0
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 1.5e-119 433.0 229 91.7
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 1.9e-119 432.6 228 90.8
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 90.3
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 4.3e-119 431.4 229 90.8
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 7.3e-119 430.6 228 90.4
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.6e-118 429.5 229 89.5
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 90.3
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 88.5
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 4.8e-118 427.9 228 90.4
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 6.2e-118 427.6 227 89.0
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 6.2e-118 427.6 229 89.5
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 8.1e-118 427.2 229 90.0
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.1e-117 426.8 227 89.9
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 89.9
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 6.9e-117 424.1 229 88.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 6.9e-117 424.1 229 88.2
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.6e-116 422.2 229 86.9
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 3.4e-116 421.8 220 90.5
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 3.4e-116 421.8 229 88.2
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 88.5
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 4.9e-115 417.9 229 88.2
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.1e-114 416.8 229 87.8
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.4e-114 416.4 229 87.8
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.4e-114 414.5 229 87.8
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.2e-113 413.3 227 85.5
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 87.2
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 87.2
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 87.2
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 87.2
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 87.2
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 3.5e-113 411.8 227 86.8
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 89.5
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 1.0e-112 410.2 229 83.4
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.3e-112 409.1 229 83.4
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 3.9e-112 408.3 227 85.5
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 3.9e-112 408.3 227 85.0
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 3.9e-112 408.3 227 85.5
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.9e-111 406.0 227 85.5
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 3.3e-111 405.2 236 83.9
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 1.6e-110 402.9 226 82.7
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 2.8e-110 402.1 227 83.3
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 2.8e-110 402.1 226 83.2
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 83.3
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 4.8e-110 401.4 227 83.3
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.1e-109 400.2 228 83.3
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 1.1e-109 400.2 227 83.7
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.4e-109 399.8 227 82.8
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 4.0e-109 398.3 254 78.0
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 5.3e-109 397.9 227 82.8
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.2e-107 392.5 202 92.6
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.1e-106 390.2 227 80.2
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 4.2e-106 388.3 204 90.7
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 7.9e-105 384.0 203 90.6
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.9e-103 379.4 229 81.2
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 2.5e-103 379.0 201 91.0
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.1e-102 375.9 227 76.7
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 6.9e-101 370.9 229 76.9
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 5.8e-100 367.9 229 73.8
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 5.8e-100 367.9 229 73.8
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 5.8e-100 367.9 200 84.5
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 1.0e-99 367.1 200 88.5
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.3e-99 366.7 190 94.2
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 8.4e-99 364.0 190 92.1
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 1.1e-98 363.6 191 92.1
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 1.4e-98 363.2 227 72.2
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 5.5e-98 361.3 233 78.1
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 2.7e-97 359.0 219 80.4
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 7.9e-97 357.5 250 73.2
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 2.5e-95 352.4 191 89.0
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 1.3e-94 350.1 227 74.0
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 2.2e-94 349.4 187 90.9
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 8.2e-94 347.4 185 91.4
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.4e-93 346.7 185 89.2
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.4e-93 345.9 227 75.3
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 5.5e-90 334.7 226 67.7
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 8.8e-88 327.4 226 70.8
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 3.4e-84 315.5 355 51.0
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 4.5e-84 315.1 162 93.8
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 4.2e-82 308.5 164 90.2
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.7e-75 286.6 160 85.0
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.3e-70 268.1 160 77.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 5.0e-59 231.9 120 90.8
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.6e-57 226.9 131 79.4
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 4.7e-57 225.3 154 67.5
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.0e-36 156.8 140 57.9
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.0e-27 126.3 69 85.5
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 1.3e-22 110.9 62 75.8
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.5e-18 97.4 152 40.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.6e-17 94.0 124 45.2
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 5.8e-15 85.5 81 53.1
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 5.8e-15 85.5 45 82.2
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 7.1e-13 78.6 52 65.4
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.7e-12 76.6 79 49.4
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 3.9e-11 72.8 49 69.4
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.9e-10 70.5 82 52.4
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 4.4e-07 59.3 26 100.0


User provided reference genes

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