Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.6e-205 717.6 347 100.0
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 5.2e-201 704.1 347 98.0
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.9e-199 698.4 347 97.1
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.9e-199 698.4 347 96.8
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.8e-194 681.8 379 88.9
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 3.6e-186 654.8 346 91.0
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 7.3e-171 604.0 342 84.8
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.1e-169 600.1 342 83.6
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.7e-167 592.8 348 81.3
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 7.6e-152 540.8 344 74.4
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 2.9e-151 538.9 345 75.4
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 6.5e-151 537.7 345 75.7
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.9e-150 536.2 344 73.5
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.7e-149 532.3 343 74.1
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 7.9e-149 530.8 345 74.2
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 3.0e-148 528.9 344 74.1
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 3.0e-148 528.9 342 73.1
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 7.4e-147 524.2 346 75.4
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 1.6e-146 523.1 344 71.8
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 2.2e-146 522.7 344 73.0
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 2.8e-146 522.3 346 72.5
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 4.8e-146 521.5 346 73.1
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.1e-145 520.4 346 72.8
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 1.4e-145 520.0 345 73.3
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 2.4e-145 519.2 348 73.6
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 3.1e-145 518.8 344 72.7
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 5.3e-145 518.1 344 72.7
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 6.9e-145 517.7 338 73.7
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.0e-144 516.2 346 72.5
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 5.9e-144 514.6 344 73.3
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 5.9e-144 514.6 343 71.7
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.3e-143 513.5 345 70.1
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.3e-143 513.5 375 68.3
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 2.9e-143 512.3 345 73.0
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 3.8e-143 511.9 337 72.4
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 5.0e-143 511.5 338 74.6
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.1e-142 510.4 343 71.4
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.9e-142 509.6 338 71.6
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.9e-142 509.6 338 71.9
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 2.5e-142 509.2 337 73.3
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.7e-141 505.8 345 72.2
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.7e-141 505.8 345 71.9
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 2.7e-141 505.8 342 70.2
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 6.1e-141 504.6 343 70.8
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.4e-140 503.4 342 69.6
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.4e-140 503.4 344 69.8
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.8e-140 503.1 348 72.4
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 2.3e-140 502.7 346 70.5
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 3.0e-140 502.3 346 69.7
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.0e-140 502.3 344 70.3
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 5.1e-140 501.5 343 70.0
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 5.1e-140 501.5 346 70.8
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 5.1e-140 501.5 346 71.1
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 8.8e-140 500.7 346 71.7
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 8.8e-140 500.7 337 71.5
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 2.5e-139 499.2 341 73.0
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 2.5e-139 499.2 344 70.1
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 2.5e-139 499.2 336 71.4
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 4.3e-139 498.4 346 70.2
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 5.7e-139 498.0 347 70.6
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 7.4e-139 497.7 340 70.0
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 7.4e-139 497.7 346 69.7
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 9.7e-139 497.3 342 69.9
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 8.2e-138 494.2 343 68.2
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 6.9e-137 491.1 342 68.7
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 2.0e-136 489.6 345 69.6
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.0e-135 487.3 345 67.8
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 3.8e-135 485.3 333 70.9
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 5.0e-135 485.0 363 65.3
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 6.5e-135 484.6 348 68.7
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 4.2e-134 481.9 349 68.2
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 4.2e-134 481.9 349 68.2
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 5.5e-134 481.5 339 68.1
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 5.5e-134 481.5 354 67.2
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 7.2e-134 481.1 300 76.7
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 7.2e-134 481.1 345 68.1
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 2.7e-133 479.2 336 68.2
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 6.1e-133 478.0 349 68.2
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.0e-132 477.2 346 67.9
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 1.8e-132 476.5 346 67.6
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 2.3e-132 476.1 350 66.6
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 5.1e-132 474.9 405 60.2
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 6.7e-132 474.6 327 70.3
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.0e-131 473.0 350 66.0
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 1.7e-130 469.9 344 65.4
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 7.0e-129 464.5 322 69.9
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.2e-128 463.8 348 65.8
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 1.2e-128 463.8 340 66.2
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 2.6e-128 462.6 348 66.7
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 4.5e-128 461.8 328 69.8
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 6.5e-127 458.0 344 64.8
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 2.5e-126 456.1 291 75.3
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 3.2e-126 455.7 343 67.1
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 3.2e-126 455.7 351 63.8
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 4.2e-126 455.3 344 64.8
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 1.2e-125 453.8 349 61.0
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 6.1e-125 451.4 344 64.8
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 1.5e-123 446.8 343 63.8
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 2.0e-123 446.4 344 63.1
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 4.4e-123 445.3 300 72.7
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 9.4e-118 427.6 323 65.9
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 2.8e-114 416.0 341 60.4
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 9.1e-113 411.0 233 80.7
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 5.9e-112 408.3 248 75.8
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 5.5e-110 401.7 247 75.7
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.7e-109 399.4 248 73.8
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 5.0e-103 378.6 324 62.0
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 8.6e-103 377.9 305 61.3
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.0e-100 370.9 251 72.9
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 4.0e-100 369.0 330 58.5
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 4.5e-96 355.5 232 72.8
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 6.8e-92 341.7 326 56.7
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 1.1e-89 334.3 240 67.9
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 6.2e-85 318.5 244 63.5
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.1e-84 317.8 241 67.6
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.8e-84 317.0 241 67.6
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.6e-83 313.2 240 65.8
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 5.8e-83 312.0 338 49.4
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 3.3e-78 296.2 241 61.8
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 2.7e-64 250.0 173 70.5
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 7.3e-62 241.9 163 72.4
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 3.6e-61 239.6 200 61.0
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 3.1e-60 236.5 245 48.6
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.2e-59 234.6 200 60.5
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.0e-52 209.5 175 61.1
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 9.0e-52 208.4 179 58.1
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 3.8e-50 203.0 199 50.8
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.4e-25 121.3 73 76.7
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 1.6e-24 117.9 79 67.1
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 5.9e-19 99.4 57 73.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 8.5e-10 68.9 53 66.0


User provided reference genes

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