Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-99 367.5 358 100.0
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.8e-48 196.8 281 97.2
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.1e-44 182.2 267 97.8
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.1e-43 180.6 268 95.9
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.3e-42 177.2 269 97.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 7.6e-38 162.2 268 85.4
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 7.4e-33 145.6 248 87.1
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 2.8e-32 143.7 250 87.6
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 7.6e-30 135.6 266 80.1
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 4.9e-29 132.9 248 85.1
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 6.5e-29 132.5 247 79.8
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.5e-28 130.6 246 81.7
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 9.3e-28 128.6 260 75.8
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.6e-27 127.9 251 82.9
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 2.1e-27 127.5 249 78.7
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 2.1e-27 127.5 249 78.7
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.7e-27 127.1 249 78.7
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 6.0e-27 125.9 247 82.6
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 7.9e-27 125.6 247 78.9
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 7.9e-27 125.6 247 78.9
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.0e-26 125.2 247 83.4
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.3e-26 124.8 247 83.8
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 2.3e-26 124.0 249 81.1
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 2.5e-25 120.6 247 83.8
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.3e-25 119.8 266 79.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 4.3e-25 119.8 252 82.9
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 7.4e-25 119.0 247 83.8
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.3e-24 118.2 249 73.1
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.7e-24 116.7 253 78.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.7e-24 116.7 263 73.8
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 4.8e-24 116.3 258 77.1
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 6.3e-24 115.9 249 79.5
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 6.3e-24 115.9 263 80.2
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 8.2e-24 115.5 265 75.5
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.8e-23 114.4 253 69.2
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.8e-23 114.4 244 78.3
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 2.4e-23 114.0 250 82.0
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.4e-23 114.0 252 77.8
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 3.1e-23 113.6 247 75.7
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 9.0e-23 112.1 266 78.9
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.0e-22 110.9 248 77.0
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.0e-22 110.9 266 75.6
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.6e-22 110.5 263 77.9
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.4e-22 110.2 245 82.9
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 7.7e-22 109.0 264 81.8
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.3e-21 108.2 269 73.2
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.3e-21 108.2 266 79.7
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.4e-20 104.8 247 81.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.4e-20 104.8 247 77.7
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.4e-20 104.8 247 77.3
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 7.2e-20 102.4 247 80.2
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.2e-19 101.7 263 76.4
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.6e-19 101.3 247 76.1
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 2.7e-19 100.5 254 70.9
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 3.6e-19 100.1 240 81.2
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 3.6e-19 100.1 276 75.0
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 1.4e-18 98.2 247 73.7
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.4e-18 98.2 268 71.6
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.0e-18 97.1 266 76.7
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 8.8e-18 95.5 245 80.8
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 3.3e-17 93.6 263 76.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.3e-17 93.2 53 79.2
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 5.7e-17 92.8 229 82.5
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 5.7e-17 92.8 72 66.7
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 5.7e-17 92.8 264 78.8
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 1.3e-16 91.7 273 76.6
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.7e-16 91.3 243 70.0
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 2.2e-16 90.9 218 86.2
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.2e-16 90.9 72 76.4
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 8.2e-16 89.0 53 77.4
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 3.1e-15 87.0 67 76.1
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.3e-15 86.3 246 74.8
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.9e-14 82.8 53 71.7
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.0e-13 82.0 264 68.9
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-13 81.3 53 69.8
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.7e-13 81.3 79 65.8
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.2e-13 80.9 53 69.8
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.2e-13 80.9 70 65.7
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.9e-13 80.5 246 82.1
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 6.5e-13 79.3 53 69.8
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 6.5e-13 79.3 53 69.8
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 6.5e-13 79.3 53 69.8
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.9e-12 77.8 52 67.3
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.9e-12 77.8 71 63.4
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.9e-12 77.8 53 67.9
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.5e-12 77.4 53 67.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 4.2e-12 76.6 50 72.0
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 5.5e-12 76.3 52 65.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 5.5e-12 76.3 52 65.4
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 7.2e-12 75.9 70 65.7
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 9.4e-12 75.5 53 67.9
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.2e-11 75.1 53 66.0
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.1e-11 74.3 52 71.2
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.1e-11 74.3 71 56.3
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 6.1e-11 72.8 71 64.8
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 7.9e-11 72.4 53 60.4
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.4e-10 71.6 51 66.7
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.3e-10 70.9 52 63.5
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 2.3e-10 70.9 52 63.5
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 2.3e-10 70.9 53 60.4
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.0e-10 70.5 238 75.6
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 3.0e-10 70.5 245 74.7
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 3.0e-10 70.5 56 58.9
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 8.8e-10 68.9 47 68.1
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.1e-09 68.6 53 58.5
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 1.1e-09 68.6 53 58.5
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.5e-09 68.2 48 66.7
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.6e-09 67.4 53 60.4
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.6e-09 67.4 53 60.4
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.6e-09 67.4 54 57.4
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 4.4e-09 66.6 52 59.6
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 4.4e-09 66.6 48 64.6
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.7e-09 66.2 53 56.6
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 5.7e-09 66.2 278 59.0
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.7e-08 64.7 51 62.7
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.7e-08 64.7 53 60.4
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 8.2e-08 62.4 45 62.2
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.1e-07 62.0 46 60.9
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.4e-07 61.6 227 77.1
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 2.4e-07 60.8 74 50.0
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.4e-07 60.8 54 53.7
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 3.1e-07 60.5 49 53.1
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 3.1e-07 60.5 72 44.4
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 4.1e-07 60.1 51 60.8
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 4.1e-07 60.1 51 60.8
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.3e-07 59.7 58 51.7
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 5.3e-07 59.7 54 55.6
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 9.1e-07 58.9 54 51.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.2e-06 58.5 53 50.9
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.5e-06 58.2 54 51.9
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 2.0e-06 57.8 54 51.9
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.6e-06 57.4 45 57.8
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 4.5e-06 56.6 54 51.9
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 7.7e-06 55.8 42 57.1
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 7.7e-06 55.8 54 50.0
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 7.7e-06 55.8 45 55.6
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 7.7e-06 55.8 54 50.0


User provided reference genes

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