Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 8.5e-182 640.2 318 100.0
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 7.5e-138 494.2 255 95.3
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 4.9e-137 491.5 255 94.5
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.4e-128 462.6 241 95.0
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 4.1e-128 461.8 241 95.0
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 3.8e-113 412.1 272 79.8
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 3.2e-80 302.8 266 62.0
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 1.0e-78 297.7 232 67.7
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 1.1e-75 287.7 215 67.4
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 5.3e-75 285.4 231 65.4
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 7.7e-74 281.6 224 63.8
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 7.7e-74 281.6 229 63.3
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 1.0e-73 281.2 255 58.4
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 1.3e-73 280.8 215 65.6
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 1.7e-73 280.4 223 66.4
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 3.8e-73 279.3 261 57.5
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 5.0e-73 278.9 230 63.0
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 3.2e-72 276.2 233 62.7
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 3.2e-72 276.2 247 60.3
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 7.2e-72 275.0 240 60.0
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 1.2e-71 274.2 237 59.9
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 3.6e-71 272.7 233 61.8
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 3.6e-71 272.7 204 67.6
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 3.6e-71 272.7 233 61.8
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 3.6e-71 272.7 233 61.8
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 7.9e-71 271.6 249 57.8
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 1.0e-70 271.2 223 63.7
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 1.0e-70 271.2 246 59.3
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 1.8e-70 270.4 209 65.6
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 1.8e-70 270.4 216 65.7
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 1.8e-70 270.4 264 56.8
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 2.3e-70 270.0 242 58.3
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 2.3e-70 270.0 240 61.7
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 3.0e-70 269.6 205 68.8
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 3.9e-70 269.2 230 57.8
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 5.1e-70 268.9 215 61.4
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 2.0e-69 266.9 210 61.9
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 2.0e-69 266.9 227 61.7
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 2.5e-69 266.5 211 63.0
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 2.5e-69 266.5 229 60.7
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 3.3e-69 266.2 227 61.7
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 5.7e-69 265.4 205 64.9
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 9.7e-69 264.6 230 60.0
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 1.3e-68 264.2 241 56.4
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 2.2e-68 263.5 251 57.4
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 2.2e-68 263.5 226 61.9
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 2.8e-68 263.1 227 59.0
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 4.8e-68 262.3 221 61.1
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 1.1e-67 261.2 223 61.4
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 1.8e-67 260.4 229 59.4
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 6.9e-67 258.5 219 61.6
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 9.1e-67 258.1 261 54.0
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 3.4e-66 256.1 245 55.9
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 4.5e-66 255.8 212 61.8
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 4.5e-66 255.8 241 57.7
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 4.5e-66 255.8 210 63.3
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 4.5e-66 255.8 232 56.9
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 7.7e-66 255.0 201 62.7
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 7.7e-66 255.0 245 55.5
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 1.3e-65 254.2 273 53.8
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 1.7e-65 253.8 240 57.5
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 1.7e-65 253.8 254 54.7
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 2.2e-65 253.4 210 61.0
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 2.2e-65 253.4 223 59.6
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 2.9e-65 253.1 240 57.5
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 5.0e-65 252.3 200 64.5
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 5.0e-65 252.3 200 64.5
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 5.0e-65 252.3 214 59.8
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 8.5e-65 251.5 240 57.1
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 8.5e-65 251.5 241 56.4
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 8.5e-65 251.5 243 56.4
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 1.1e-64 251.1 190 66.3
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 1.9e-64 250.4 253 54.2
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 2.5e-64 250.0 243 55.6
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 9.4e-64 248.1 223 57.4
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 1.2e-63 247.7 212 60.4
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 7.9e-63 245.0 237 55.7
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 2.3e-62 243.4 232 55.6
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 3.0e-62 243.0 292 50.7
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 5.1e-62 242.3 245 53.9
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 8.8e-62 241.5 246 54.1
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 7.4e-61 238.4 265 52.5
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 2.2e-60 236.9 186 63.4
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 3.7e-60 236.1 236 53.4
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 8.2e-60 235.0 199 60.8
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 2.2e-57 226.9 171 64.3
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 2.5e-56 223.4 225 55.6
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 3.2e-56 223.0 278 47.1
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 1.4e-54 217.6 349 39.8
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 4.8e-52 209.1 202 54.5
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 4.8e-52 209.1 197 53.3
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 1.3e-49 201.1 243 51.9
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 1.5e-48 197.6 185 50.3
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 6.7e-46 188.7 189 49.7
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 2.6e-45 186.8 163 55.8
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 4.4e-45 186.0 161 59.6
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 9.7e-45 184.9 218 49.5
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 1.6e-42 177.6 197 51.8
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 4.5e-42 176.0 171 49.1
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 2.9e-33 146.7 145 59.3
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 5.0e-33 146.0 124 61.3
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 7.2e-32 142.1 188 43.1
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 4.0e-30 136.3 91 72.5
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 1.3e-28 131.3 130 51.5
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 3.7e-28 129.8 160 43.8
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 6.3e-28 129.0 215 40.9
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 9.2e-27 125.2 141 48.9
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 8.9e-22 108.6 141 45.4
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.7e-20 104.4 190 39.5
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 1.9e-19 100.9 140 40.0
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 7.0e-19 99.0 100 54.0
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 2.7e-10 70.5 68 52.9
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 6.0e-10 69.3 102 39.2
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.3e-09 68.2 93 44.1
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 8.6e-09 65.5 84 47.6
FAN11G2791 Fragaria x ananassa HOM05D000710 ORTHO05D000336 2.3e-06 57.4 49 61.2
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 6.8e-06 55.8 61 44.3


User provided reference genes

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