Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.1e-251 870.2 509 100.0
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.1e-243 843.6 509 97.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.4e-240 833.6 509 95.1
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 8.7e-237 823.5 509 94.5
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.9e-212 742.7 510 85.9
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 8.3e-155 551.2 382 88.5
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.0e-136 489.6 380 81.3
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.0e-133 479.2 547 53.9
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 5.8e-132 475.3 551 57.4
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.2e-129 467.6 553 57.0
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 3.2e-114 416.4 554 49.1
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.9e-111 407.1 566 52.1
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.3e-110 404.4 540 52.2
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.3e-110 404.4 558 51.6
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 2.1e-110 403.7 552 50.7
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.8e-110 403.3 567 51.3
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.8e-109 400.6 528 54.0
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 6.9e-109 398.7 558 46.6
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 3.4e-108 396.4 543 53.8
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 7.6e-108 395.2 549 46.8
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 9.9e-108 394.8 549 46.8
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 2.2e-107 393.7 544 49.4
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.2e-107 393.7 560 50.5
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 6.4e-107 392.1 529 54.8
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 8.4e-107 391.7 549 48.1
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.4e-106 390.2 528 47.3
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 5.4e-106 389.0 553 49.4
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.4e-106 389.0 549 46.6
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.2e-105 387.9 550 45.6
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.6e-105 387.5 562 46.8
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.5e-105 386.3 551 45.2
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 3.5e-105 386.3 567 50.3
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 4.6e-105 386.0 544 49.8
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.6e-105 386.0 572 46.7
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.0e-104 384.8 544 51.1
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.0e-104 384.8 528 50.8
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 3.0e-104 383.3 537 51.4
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 8.7e-104 381.7 547 49.0
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.5e-103 380.9 567 47.6
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.5e-103 380.9 549 49.5
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.9e-103 380.6 269 78.8
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.3e-102 377.9 564 45.4
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.6e-102 377.5 544 50.9
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.8e-101 374.0 567 49.0
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.8e-101 374.0 543 50.3
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.3e-101 372.5 562 46.1
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.6e-100 370.2 551 44.5
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 4.5e-100 369.4 549 48.1
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.7e-99 367.5 532 50.2
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.8e-99 366.3 517 52.0
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 4.9e-99 365.9 534 53.4
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 4.2e-98 362.8 549 45.5
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 7.1e-98 362.1 545 51.0
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 7.1e-98 362.1 555 47.2
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.6e-97 360.9 532 47.0
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 3.5e-97 359.8 542 45.8
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 4.6e-97 359.4 599 44.2
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.8e-96 357.5 541 44.4
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.8e-96 357.5 541 44.4
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.9e-96 356.3 529 45.6
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.1e-95 354.8 555 47.9
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 3.3e-95 353.2 537 50.7
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.3e-94 351.3 544 48.9
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.6e-94 350.9 545 51.6
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.8e-94 350.1 566 41.2
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 6.2e-94 349.0 530 48.9
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 8.2e-94 348.6 548 47.4
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.1e-93 346.7 523 49.1
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.1e-93 346.7 523 49.1
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.2e-92 344.7 543 46.4
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.5e-92 344.4 554 43.7
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 2.0e-92 344.0 526 44.7
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 2.6e-92 343.6 506 45.5
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.8e-92 342.4 560 46.8
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 7.6e-92 342.0 615 43.6
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 4.9e-91 339.3 545 44.8
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 4.9e-91 339.3 550 45.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 8.4e-91 338.6 524 49.2
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 8.4e-91 338.6 568 41.2
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 2.5e-90 337.0 525 46.9
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.2e-90 336.7 573 43.6
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.2e-90 336.3 523 48.6
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.2e-90 336.3 549 41.0
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.7e-89 333.6 526 46.6
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.5e-89 333.2 529 47.3
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 3.5e-89 333.2 518 47.7
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 4.6e-89 332.8 538 41.8
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.6e-89 332.8 242 83.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 6.0e-89 332.4 544 45.2
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 6.0e-89 332.4 541 44.7
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 3.9e-88 329.7 536 44.6
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 8.7e-88 328.6 527 46.9
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.9e-87 327.4 520 47.3
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 2.5e-87 327.0 520 47.5
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 3.3e-87 326.6 470 47.0
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.3e-86 324.7 545 41.1
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 6.3e-86 322.4 521 48.0
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.4e-85 320.5 535 46.7
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.4e-85 320.5 535 46.7
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 5.3e-85 319.3 532 42.9
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 9.0e-85 318.5 528 42.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.0e-83 315.1 510 42.5
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.7e-83 314.3 541 44.0
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 2.9e-83 313.5 539 45.6
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.8e-83 313.2 468 45.9
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.2e-82 309.7 201 88.6
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 3.6e-81 306.6 562 40.4
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 3.6e-81 306.6 471 43.9
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 8.8e-80 302.0 521 42.0
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.2e-75 287.3 563 37.8
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.4e-74 284.6 410 46.6
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 2.5e-74 283.9 548 42.2
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.8e-72 277.7 566 37.5
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 5.7e-71 272.7 527 39.8
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 9.7e-71 271.9 302 55.6
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 3.9e-64 250.0 300 52.3
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 8.2e-62 242.3 348 46.8
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.5e-60 236.5 236 65.7
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 5.9e-60 236.1 676 31.1
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 7.2e-58 229.2 314 45.9
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 2.7e-57 227.3 523 41.7
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.4e-55 220.3 594 32.5
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 3.4e-55 220.3 517 41.2
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 3.4e-55 220.3 517 41.2
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.4e-55 219.9 523 41.7
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.4e-40 171.8 184 57.1
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.4e-40 171.8 579 33.3
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.3e-38 165.2 140 70.0
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.8e-37 161.4 296 40.5
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 1.6e-36 158.3 591 29.3
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 3.7e-30 137.1 227 52.0
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.6e-28 131.7 651 27.0
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.1e-26 125.6 427 29.3
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.8e-24 118.2 492 29.7
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.3e-19 101.3 416 27.2
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.5e-18 97.8 88 56.8
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.1e-17 94.7 220 35.5
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 8.1e-17 92.8 217 34.6
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.1e-13 79.7 135 43.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.5e-12 77.4 410 26.1
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.5e-12 77.4 118 42.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.9e-11 73.9 115 42.6
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 6.6e-11 73.2 176 31.2
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.1e-10 72.4 106 43.4
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.6e-09 68.6 146 38.4
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 3.6e-09 67.4 354 24.6
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.2e-09 66.6 185 35.1
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 1.5e-07 62.0 43 79.1


User provided reference genes

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