Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.9e-130 469.2 237 100.0
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.9e-130 469.2 237 100.0
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.6e-130 466.8 237 99.6
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 4.7e-129 464.5 237 98.7
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.8e-121 438.7 238 92.9
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 2.5e-106 389.0 222 86.9
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 5.6e-106 387.9 223 84.3
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 2.8e-97 359.0 222 78.4
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.4e-96 355.9 232 74.6
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 4.5e-95 351.7 233 74.7
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 5.0e-94 348.2 225 75.6
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 6.5e-94 347.8 222 75.2
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 8.5e-94 347.4 219 76.3
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.1e-93 347.1 224 73.2
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 3.2e-93 345.5 227 72.2
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 3.2e-93 345.5 221 75.6
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 9.4e-93 344.0 221 74.7
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.3e-91 339.3 239 69.5
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 3.0e-91 339.0 224 72.3
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 3.9e-91 338.6 223 75.8
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 5.1e-91 338.2 224 74.1
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 5.1e-91 338.2 228 72.8
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 6.7e-91 337.8 224 71.9
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 8.8e-91 337.4 224 72.3
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 8.8e-91 337.4 224 72.3
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.1e-90 337.0 224 71.9
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 2.5e-90 335.9 216 74.1
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.5e-90 335.9 228 72.4
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 2.5e-90 335.9 225 74.2
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 3.3e-90 335.5 224 71.4
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 9.7e-90 334.0 219 74.9
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.3e-89 333.6 220 72.7
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.7e-89 333.2 227 73.1
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.7e-89 333.2 220 72.7
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.7e-89 333.2 220 72.7
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.7e-89 333.2 224 72.8
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 2.2e-89 332.8 218 72.9
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 2.8e-89 332.4 239 68.2
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.8e-89 332.4 221 71.5
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 3.7e-89 332.0 217 74.2
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 4.8e-89 331.6 220 69.1
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.3e-89 331.3 219 70.8
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 8.2e-89 330.9 219 70.3
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.4e-88 330.1 222 72.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.8e-88 329.7 226 69.9
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 2.4e-88 329.3 218 72.0
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 5.3e-88 328.2 224 71.0
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 5.3e-88 328.2 226 70.4
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 6.9e-88 327.8 223 69.5
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 1.5e-87 326.6 228 71.9
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.0e-87 326.2 221 71.5
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 3.4e-87 325.5 224 72.8
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 3.4e-87 325.5 222 71.2
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 7.7e-87 324.3 218 72.5
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-86 323.9 221 70.6
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.3e-86 323.6 219 71.2
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.7e-86 323.2 225 70.2
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 2.9e-86 322.4 226 69.9
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.9e-86 322.4 224 68.8
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 2.9e-86 322.4 230 67.8
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.8e-86 322.0 222 71.2
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 5.0e-86 321.6 218 72.5
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.1e-85 320.5 219 70.3
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.1e-85 320.5 227 70.5
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.9e-85 319.7 223 70.4
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 4.2e-85 318.5 265 63.0
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 5.5e-85 318.2 223 68.6
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 5.5e-85 318.2 216 70.8
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.2e-84 317.0 223 68.6
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.1e-84 316.2 215 70.7
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 6.1e-84 314.7 226 69.0
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 6.1e-84 314.7 232 64.2
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.8e-83 313.2 222 68.5
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 3.9e-83 312.0 256 61.7
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 8.8e-83 310.8 230 68.3
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 3.3e-82 308.9 199 73.9
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.4e-82 308.5 234 74.4
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.8e-81 305.8 227 67.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.8e-81 305.1 223 66.4
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 8.2e-81 304.3 227 64.3
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 7.0e-80 301.2 223 65.9
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.5e-79 300.1 223 65.0
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.0e-79 299.7 196 75.0
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.3e-78 297.0 223 64.6
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.7e-78 296.6 224 62.9
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.2e-78 296.2 227 66.1
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.9e-78 295.8 186 76.9
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 8.5e-78 294.3 217 65.4
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.1e-77 293.9 246 60.2
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 2.5e-77 292.7 221 67.0
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 3.2e-77 292.4 224 62.1
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 3.2e-77 292.4 224 62.1
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.2e-77 292.4 226 63.3
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 7.2e-77 291.2 285 56.5
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.6e-76 290.0 187 75.4
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 2.7e-76 289.3 224 61.2
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 2.7e-76 289.3 224 61.2
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 8.0e-76 287.7 224 61.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.0e-75 287.3 230 62.2
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.4e-75 287.0 192 71.4
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.4e-75 287.0 227 60.8
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.8e-75 286.6 227 65.2
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.8e-75 286.6 195 70.8
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.8e-75 286.6 195 70.8
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 3.0e-75 285.8 227 59.9
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 3.9e-75 285.4 221 67.9
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 6.7e-75 284.6 193 69.4
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 8.8e-75 284.3 230 61.7
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.1e-74 283.9 227 59.0
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.3e-74 282.3 230 61.3
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.4e-74 282.0 223 62.3
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.4e-74 282.0 223 61.9
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 5.7e-74 281.6 228 59.6
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 5.7e-74 281.6 228 59.6
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 5.7e-74 281.6 219 65.3
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.7e-73 280.0 228 59.2
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.7e-73 280.0 228 59.2
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.7e-73 280.0 228 59.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 8.2e-73 277.7 217 61.3
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 7.0e-72 274.6 217 60.4
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 7.0e-72 274.6 222 64.0
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.6e-71 272.7 221 61.5
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.5e-66 256.9 222 57.2
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.5e-66 256.9 222 57.2
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.4e-66 255.4 191 64.9
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.7e-65 253.4 207 61.8
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 6.3e-65 251.5 198 59.1
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.1e-64 250.8 192 63.0
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.4e-64 249.6 222 56.3
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.1e-64 249.2 204 57.4
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 5.9e-63 245.0 161 69.6
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.5e-61 239.6 157 72.6
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.2e-60 237.3 152 73.7
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 2.7e-60 236.1 147 75.5
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.0e-58 229.9 238 54.6
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 7.0e-56 221.5 173 65.3
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.0e-54 217.6 217 51.6
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.3e-54 217.2 222 49.1
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 4.2e-53 212.2 193 54.4
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 4.2e-53 212.2 180 58.3
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.6e-52 210.3 217 46.1
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.7e-52 208.8 217 48.4
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 8.6e-46 188.0 144 58.3
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.7e-41 173.7 121 65.3
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.1e-40 171.0 118 68.6
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 1.6e-39 167.2 121 63.6
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 2.8e-36 156.4 178 44.4
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-35 152.9 124 61.3
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 3.2e-32 142.9 147 46.9
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.2e-31 141.0 90 74.4
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 2.7e-31 139.8 97 71.1
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 3.2e-24 116.3 209 34.0
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-21 107.1 153 41.8
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-21 107.1 153 41.8
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.2e-20 104.4 65 80.0
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 8.1e-20 101.7 76 64.5
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 7.6e-18 95.1 75 60.0
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.7e-15 86.7 76 56.6
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.3e-14 84.3 71 60.6
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 7.3e-13 78.6 47 70.2
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 1.7e-09 67.4 59 61.0
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 1.0e-06 58.2 38 65.8


User provided reference genes

Program Settings