Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.6e-310 1068.5 525 100.0
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-276 956.1 500 95.4
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.2e-271 937.6 500 93.8
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.6e-265 919.1 539 87.2
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.3e-251 870.2 514 87.0
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.1e-194 683.7 578 64.2
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.2e-70 270.8 621 34.1
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 5.1e-67 259.6 512 36.3
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.8e-67 258.8 512 36.1
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.0e-63 247.7 507 35.3
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.0e-59 235.3 576 32.6
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 7.2e-53 212.6 460 34.1
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.2e-50 205.3 535 32.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.8e-49 199.9 597 30.2
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 6.8e-35 152.9 202 43.1
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.2e-34 152.1 211 42.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 2.0e-34 151.4 608 27.8
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.7e-33 148.3 653 27.4
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.4e-32 145.2 241 38.2
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 8.0e-28 129.4 451 26.4
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.8e-27 128.3 216 38.9
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.5e-26 125.2 525 26.9
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.0e-26 124.8 524 27.1
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 3.4e-26 124.0 280 34.6
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 5.7e-26 123.2 611 25.2
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 5.4e-24 116.7 274 31.4
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.6e-23 115.2 548 27.2
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 5.9e-23 113.2 208 36.5
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 5.9e-23 113.2 291 30.9
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 3.0e-22 110.9 316 32.3
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 3.3e-21 107.5 430 28.1
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 4.3e-21 107.1 140 42.9
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 5.6e-21 106.7 362 29.6
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 5.6e-21 106.7 201 34.8
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 7.3e-21 106.3 113 48.7
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 2.8e-20 104.4 164 40.9
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 4.7e-20 103.6 126 44.4
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 1.1e-19 102.4 408 26.7
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 5.2e-19 100.1 396 25.3
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 6.8e-19 99.8 232 33.2
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 8.9e-19 99.4 259 35.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.5e-18 98.6 159 36.5
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 2.0e-18 98.2 412 27.4
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 2.0e-18 98.2 391 27.1
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 2.0e-18 98.2 118 41.5
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.6e-18 97.8 386 26.2
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.6e-18 97.8 164 36.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 5.8e-18 96.7 261 30.7
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 9.8e-18 95.9 414 26.8
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.7e-17 95.1 414 26.1
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.7e-17 95.1 163 36.8
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.2e-17 94.7 395 26.6
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.2e-17 94.7 444 26.1
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 3.7e-17 94.0 164 35.4
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 3.7e-17 94.0 209 29.7
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.4e-16 92.0 155 36.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 2.4e-16 91.3 154 39.0
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.4e-16 91.3 451 24.6
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 4.1e-16 90.5 545 24.8
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 7.0e-16 89.7 157 36.3
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.2e-15 89.0 202 33.2
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.2e-15 89.0 262 29.8
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.6e-15 88.6 147 34.7
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.7e-15 87.8 435 25.7
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.6e-15 87.0 263 28.9
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 4.6e-15 87.0 153 37.3
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 6.0e-15 86.7 406 25.6
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 7.8e-15 86.3 198 30.3
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 7.8e-15 86.3 202 33.2
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.0e-14 85.9 250 26.4
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.0e-14 85.9 156 32.7
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.0e-14 85.9 530 24.3
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.3e-14 85.5 113 40.7
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.7e-14 85.1 257 26.8
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.3e-14 84.7 113 39.8
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 2.3e-14 84.7 166 34.9
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.3e-14 84.7 469 25.4
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 3.0e-14 84.3 357 26.6
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.9e-14 84.0 333 26.1
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 3.9e-14 84.0 134 38.8
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 3.9e-14 84.0 114 43.0
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 5.0e-14 83.6 395 25.1
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 6.6e-14 83.2 120 40.8
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 6.6e-14 83.2 438 23.1
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 8.6e-14 82.8 411 24.6
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 8.6e-14 82.8 155 34.8
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.1e-13 82.4 396 25.5
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.1e-13 82.4 457 25.2
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.5e-13 82.0 395 24.1
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.5e-13 82.0 167 34.1
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 2.5e-13 81.3 77 45.5
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 3.3e-13 80.9 217 27.2
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.3e-13 80.9 384 27.6
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 4.3e-13 80.5 155 36.1
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 4.3e-13 80.5 405 25.2
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.3e-13 80.5 487 25.3
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.6e-13 80.1 126 38.1
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 9.5e-13 79.3 204 29.4
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 9.5e-13 79.3 257 30.0
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.2e-12 79.0 198 28.3
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.2e-12 79.0 117 38.5
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.6e-12 78.6 239 28.0
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 2.8e-12 77.8 240 28.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.7e-12 77.0 120 36.7
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 6.2e-12 76.6 117 36.8
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 6.2e-12 76.6 140 35.0
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 6.2e-12 76.6 140 35.0
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 6.2e-12 76.6 398 25.6
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.1e-11 75.9 121 36.4
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.1e-11 75.9 131 34.4
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.1e-11 75.9 205 28.8
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.4e-11 75.5 434 23.7
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.4e-11 75.5 253 26.5
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.4e-11 75.5 396 26.8
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-11 75.5 152 33.6
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.8e-11 75.1 140 34.3
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 1.8e-11 75.1 319 26.0
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.8e-11 75.1 140 35.0
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.3e-11 74.7 319 26.0
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.3e-11 74.7 231 26.8
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 3.1e-11 74.3 141 34.8
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 4.0e-11 73.9 269 27.1
FvH4_2g27970 Fragaria vesca HOM05D006236 ORTHO05D003486 4.0e-11 73.9 245 33.5
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 5.2e-11 73.6 320 26.2
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 6.8e-11 73.2 321 26.5
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 8.9e-11 72.8 471 23.4
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 1.2e-10 72.4 479 24.0
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 2.0e-10 71.6 157 33.8
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 2.0e-10 71.6 179 33.5
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.0e-10 71.6 113 31.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.0e-10 71.6 113 31.9
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 2.0e-10 71.6 423 25.8
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 2.6e-10 71.2 172 27.3
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 5.8e-10 70.1 56 50.0
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 7.5e-10 69.7 373 24.9
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 9.9e-10 69.3 157 33.1
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.2e-09 68.2 96 39.6
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.2e-09 68.2 105 36.2
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.9e-09 67.8 112 32.1
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 2.9e-09 67.8 112 32.1
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.9e-09 67.8 441 22.4
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.7e-09 67.4 468 22.2
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 3.7e-09 67.4 112 34.8
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.7e-09 67.4 105 37.1
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.9e-09 67.0 124 30.6
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.3e-09 66.2 402 23.6
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.4e-08 65.5 112 31.2
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.4e-08 65.5 123 30.1
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 1.4e-08 65.5 161 29.8
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 1.9e-08 65.1 112 31.2
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 1.9e-08 65.1 180 26.1
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 2.4e-08 64.7 394 23.4
TAR381G0115 Trochodendron aralioides HOM05D006236 ORTHO05D003486 2.4e-08 64.7 427 24.6
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 4.1e-08 63.9 487 21.6
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 5.4e-08 63.5 485 22.3
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 5.4e-08 63.5 172 32.6
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 7.1e-08 63.2 386 23.8
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 9.2e-08 62.8 386 23.8
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 1.6e-07 62.0 41 48.8
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 4.6e-07 60.5 101 30.7
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 7.8e-07 59.7 478 22.4
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 1.0e-06 59.3 101 32.7
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.0e-06 59.3 123 30.1
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.3e-06 58.9 112 30.4
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 1.3e-06 58.9 96 37.5
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.3e-06 58.2 154 30.5
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.1e-06 57.0 116 28.4
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 6.6e-06 56.6 117 29.1
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 6.6e-06 56.6 134 28.4
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 6.6e-06 56.6 426 23.0


User provided reference genes

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