Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2576.2 1282 100.0
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2481.1 1282 97.0
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2479.1 1282 96.7
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 0.0e+00 2476.0 1282 96.8
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 0.0e+00 2189.8 1283 86.0
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 0.0e+00 1334.7 1300 58.2
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 0.0e+00 1087.4 1301 51.7
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 7.7e-274 948.0 1071 54.1
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-245 854.4 459 94.1
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-245 854.0 457 94.5
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.7e-245 852.0 457 94.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 7.7e-242 841.6 1319 42.0
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.7e-241 840.5 1373 40.9
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 7.7e-234 815.1 1321 41.4
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.6e-229 800.0 1365 39.9
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 6.2e-223 778.9 1337 40.0
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.6e-210 736.1 1311 38.5
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 5.6e-208 729.2 1322 39.3
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 4.7e-207 726.1 1302 38.0
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.1e-203 714.9 1316 38.0
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 7.8e-202 708.8 1291 37.7
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 4.3e-200 703.0 1304 37.0
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.0e-198 696.4 457 80.3
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.7e-194 683.7 1313 38.4
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.6e-189 667.2 1310 36.2
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 9.3e-187 658.7 1283 37.0
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 6.0e-186 656.0 1309 36.1
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.6e-184 649.4 1302 36.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 9.6e-184 648.7 1312 36.7
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.7e-183 646.7 1302 35.9
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 9.0e-182 642.1 1245 35.7
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-179 634.8 324 97.2
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.6e-178 631.3 1348 36.9
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 2.5e-176 624.0 1329 36.0
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.9e-172 609.8 1284 35.0
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.0e-169 600.5 1280 34.4
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.5e-168 598.2 1257 35.2
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.1e-166 590.5 1288 34.2
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.2e-143 512.7 282 92.2
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.0e-132 476.9 1456 30.0
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 7.5e-128 463.0 1307 30.8
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 8.0e-122 443.0 1299 31.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.8e-121 441.8 1295 30.8
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 4.0e-121 440.7 1311 31.7
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.4e-118 432.2 1285 31.6
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 7.0e-118 429.9 1304 31.9
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 2.7e-117 427.9 1287 31.8
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 3.8e-116 424.1 1289 31.5
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 8.6e-116 422.9 1316 31.2
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 9.5e-115 419.5 1044 32.8
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.1e-114 418.3 1340 31.3
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 2.1e-114 418.3 1313 30.8
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 3.6e-114 417.5 1343 30.0
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.5e-112 412.1 1290 31.5
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 8.3e-111 406.4 1292 31.3
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.0e-108 397.9 1296 29.9
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.9e-107 395.2 1318 30.6
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.6e-106 391.0 1295 30.1
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 3.6e-106 391.0 1290 30.7
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.4e-102 379.0 1307 29.8
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 1.2e-101 375.9 1293 29.7
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-100 371.3 1302 28.4
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 6.2e-98 363.6 1054 32.4
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 6.8e-97 360.1 1290 29.3
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.4e-89 335.9 1305 29.0
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 5.2e-89 334.0 1315 28.6
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.3e-87 329.3 1311 27.7
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 3.5e-85 321.2 826 33.1
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.1e-83 316.2 1295 27.7
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 9.0e-81 306.6 1336 27.6
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 4.4e-80 304.3 1325 27.8
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.4e-80 304.3 551 38.7
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 2.8e-74 285.0 1297 27.1
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 4.8e-74 284.3 1290 27.2
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 4.8e-74 284.3 1286 27.2
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.0e-72 278.9 1272 27.2
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.0e-72 278.9 1295 26.6
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 4.9e-71 274.2 1390 26.5
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 4.6e-69 267.7 1283 26.5
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.3e-68 265.4 1310 26.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.0e-64 252.3 1260 26.7
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.4e-62 246.1 1283 26.1
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 4.2e-62 244.6 388 39.4
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 5.1e-60 237.7 1269 25.5
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 6.7e-60 237.3 1337 25.7
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 9.6e-59 233.4 1285 26.1
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.0e-55 223.4 1312 24.8
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.3e-55 223.0 1273 25.8
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 6.5e-55 220.7 1292 25.3
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.2e-54 218.0 1314 25.0
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.1e-54 217.2 1292 25.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 1.6e-53 216.1 1315 24.1
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 2.1e-53 215.7 1322 24.0
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 4.6e-53 214.5 592 31.1
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.5e-51 209.5 1280 24.8
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.8e-50 205.3 719 29.2
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.6e-48 198.7 1240 24.3
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 4.5e-48 198.0 1262 25.2
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.7e-48 197.2 1292 24.5
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 3.6e-45 188.3 267 42.7
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.6e-45 188.3 1320 23.8
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.5e-43 183.0 733 27.8
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.7e-42 179.5 1254 24.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 2.2e-42 179.1 1254 24.4
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 2.8e-42 178.7 1254 24.3
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.2e-40 173.3 1320 23.8
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 2.6e-40 172.2 1251 23.5
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 2.6e-40 172.2 1251 23.5
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 3.4e-40 171.8 1277 24.9
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.3e-39 169.9 1278 24.0
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.1e-38 166.8 1273 24.3
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-38 166.4 1256 23.9
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 1.4e-38 166.4 1256 23.5
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.6e-37 162.9 1250 23.5
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.0e-36 160.2 1250 23.8
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.4e-36 159.8 1320 25.2
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 8.8e-36 157.1 1250 23.7
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.6e-35 155.6 1266 24.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 6.3e-34 151.0 1343 23.5
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.8e-33 149.4 1382 24.0
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 3.1e-33 148.7 548 28.6
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 4.1e-33 148.3 714 27.2
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 9.1e-33 147.1 1309 23.0
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 3.5e-32 145.2 1306 23.4
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 5.9e-32 144.4 1275 23.8
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 7.7e-32 144.1 1353 22.7
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 1.7e-31 142.9 1222 25.2
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 5.0e-31 141.4 989 23.7
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.1e-29 136.0 1315 23.0
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 2.7e-29 135.6 560 28.6
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 8.0e-29 134.0 1346 22.4
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 1.8e-28 132.9 1305 22.1
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 6.7e-28 131.0 1275 22.4
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 2.6e-24 119.0 1357 22.0
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 5.9e-24 117.9 108 55.6
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 2.6e-19 102.4 99 53.5
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.6e-19 102.4 1290 22.7
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.7e-19 101.3 240 35.0
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.7e-19 100.5 662 25.2
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.7e-18 98.6 1264 22.5
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 6.3e-18 97.8 211 32.2
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 8.2e-18 97.4 470 25.3
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.1e-17 97.1 1279 22.8
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 7.0e-17 94.4 133 42.9
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 1.2e-16 93.6 284 30.6
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.0e-16 92.8 827 23.6
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 2.7e-16 92.4 1167 22.0
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 4.5e-16 91.7 117 43.6
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 1.3e-15 90.1 106 46.2
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.7e-15 89.7 713 23.6
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 2.9e-15 89.0 108 38.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 8.5e-15 87.4 828 24.0
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 5.5e-14 84.7 110 41.8
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 2.7e-13 82.4 113 38.9
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.6e-13 82.0 103 42.7
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 6.1e-13 81.3 546 24.5
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.8e-12 79.7 149 31.5
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.0e-12 79.0 99 39.4
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.8e-12 77.8 681 23.8
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 8.8e-12 77.4 1053 22.6
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.2e-11 77.0 398 25.1
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 2.0e-11 76.3 521 23.0
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 4.4e-11 75.1 464 26.7
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 4.8e-10 71.6 110 42.7
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 8.3e-10 70.9 576 23.4
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 1.1e-09 70.5 1082 21.5
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.4e-09 70.1 78 48.7
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.4e-09 70.1 365 26.0
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.8e-09 69.7 1155 21.9
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 3.1e-09 68.9 574 24.9
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 3.1e-09 68.9 1258 21.6
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 7.0e-09 67.8 210 25.2
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 1.2e-08 67.0 105 38.1
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 5.9e-08 64.7 93 38.7
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 5.9e-08 64.7 104 36.5
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 1.0e-07 63.9 78 37.2
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.1e-06 60.5 1251 22.1
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.5e-06 60.1 66 43.9
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 3.3e-06 58.9 61 42.6
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 7.2e-06 57.8 72 40.3
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 7.2e-06 57.8 60 45.0
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 7.2e-06 57.8 129 33.3


User provided reference genes

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