Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.0e-196 689.5 464 100.0
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 6.0e-169 598.2 464 80.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.9e-163 578.6 464 78.9
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 9.2e-162 574.3 464 78.9
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.5e-156 557.0 465 84.3
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.6e-142 510.4 424 77.1
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 1.9e-114 417.2 465 61.1
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 4.1e-109 399.4 507 51.1
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 2.2e-107 393.7 509 55.6
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 4.7e-97 359.4 452 53.1
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 5.2e-96 355.9 470 55.3
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 4.8e-94 349.4 470 52.6
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 4.8e-94 349.4 466 50.6
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 5.3e-93 345.9 464 55.4
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.6e-92 344.4 467 46.7
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 7.7e-92 342.0 465 50.8
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.7e-91 340.9 464 55.4
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 4.7e-89 332.8 479 49.9
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 9.8e-87 325.1 470 50.2
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 9.8e-87 325.1 441 50.6
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 3.7e-86 323.2 495 51.1
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.2e-84 318.2 449 47.9
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.3e-83 314.7 457 54.0
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.3e-83 313.9 474 44.5
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.5e-82 311.2 453 47.5
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 2.5e-82 310.5 452 50.0
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 9.5e-82 308.5 470 55.1
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 3.6e-81 306.6 467 50.3
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 4.7e-81 306.2 467 49.5
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 8.0e-81 305.4 459 52.9
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 5.2e-80 302.8 474 43.5
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 4.4e-79 299.7 452 46.0
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 4.4e-79 299.7 452 48.2
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 5.7e-79 299.3 471 51.0
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 9.8e-79 298.5 471 50.1
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 1.3e-78 298.1 472 43.6
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 2.2e-78 297.4 470 44.7
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 4.9e-78 296.2 452 43.6
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.4e-77 294.7 472 50.0
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 3.2e-77 293.5 452 46.5
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 5.4e-77 292.7 473 51.0
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 5.4e-77 292.7 449 48.3
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 2.7e-76 290.4 452 46.2
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 1.1e-74 285.0 538 41.6
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.5e-74 284.6 483 42.9
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.5e-74 284.6 464 46.6
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 3.3e-74 283.5 467 47.5
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 7.3e-74 282.3 516 46.5
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.6e-73 281.2 406 51.5
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.8e-73 280.4 471 49.3
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 4.7e-73 279.6 460 41.5
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 2.3e-72 277.3 483 40.4
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.7e-70 271.2 465 39.8
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.7e-70 270.0 457 48.6
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.1e-69 268.5 450 41.8
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 2.4e-69 267.3 469 47.8
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 7.0e-69 265.8 466 46.6
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 6.0e-68 262.7 452 42.5
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.0e-67 261.9 455 40.9
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 1.3e-67 261.5 461 38.6
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 3.0e-67 260.4 466 40.8
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 4.3e-66 256.5 351 50.4
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 2.1e-65 254.2 260 57.3
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 3.6e-65 253.4 462 41.1
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.4e-64 251.5 461 39.7
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 8.9e-64 248.8 430 42.3
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.2e-63 248.4 462 44.4
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.5e-63 248.1 448 42.4
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.0e-63 247.7 448 42.4
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.4e-63 246.9 463 38.7
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 7.5e-63 245.7 446 42.8
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 2.2e-62 244.2 461 39.7
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 8.3e-62 242.3 450 42.2
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.1e-61 241.9 470 38.5
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.2e-60 238.4 441 38.5
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 2.7e-60 237.3 451 43.2
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.5e-60 236.9 468 44.0
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 1.0e-59 235.3 411 41.8
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.3e-59 235.0 432 43.1
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 2.3e-59 234.2 447 43.0
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 3.0e-59 233.8 453 43.5
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 3.9e-59 233.4 439 41.0
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 3.9e-59 233.4 456 40.1
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 5.1e-59 233.0 452 37.6
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.5e-58 230.7 474 37.8
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 3.3e-58 230.3 577 37.3
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.6e-57 228.0 460 40.7
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 3.6e-57 226.9 459 36.8
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 6.2e-57 226.1 449 38.1
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.1e-56 225.3 453 41.9
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.8e-56 224.6 460 41.1
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 4.0e-56 223.4 294 58.2
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 2.0e-55 221.1 297 51.2
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.3e-54 218.4 474 42.0
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 8.3e-54 215.7 461 36.9
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 1.1e-53 215.3 445 36.6
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.9e-53 214.5 462 37.2
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 9.2e-53 212.2 479 35.1
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.6e-52 211.5 453 38.0
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 6.0e-52 209.5 423 36.9
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 7.8e-52 209.1 446 37.4
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 7.8e-52 209.1 449 37.6
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.9e-50 204.5 435 36.6
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.6e-49 201.4 465 35.1
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 2.8e-49 200.7 451 34.6
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.6e-49 200.3 455 40.0
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.2e-49 199.5 283 45.2
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.5e-47 194.9 437 43.2
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.5e-47 194.9 489 36.8
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 4.2e-37 160.2 269 42.8
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.8e-33 147.5 130 60.8
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.8e-33 147.5 414 32.4
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.8e-30 137.1 98 70.4
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 1.9e-29 134.8 460 28.5
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 3.5e-28 130.6 521 27.4
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.0e-27 129.0 312 34.0
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 8.7e-27 125.9 116 57.8
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.5e-26 125.2 389 39.3
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 8.1e-25 119.4 447 26.4
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 1.1e-24 119.0 466 36.3
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.3e-22 112.1 295 32.5
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.3e-19 101.3 442 27.1
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.5e-18 98.6 97 53.6
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 6.3e-17 93.2 99 49.5
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.4e-16 91.3 304 28.6
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.2e-15 89.0 206 32.0
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.3e-14 85.5 78 57.7
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.4e-13 82.0 439 26.0
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.7e-12 77.8 92 48.9
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.9e-11 73.9 68 52.9
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 8.7e-11 72.8 62 62.9
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 9.7e-10 69.3 279 36.6
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.8e-09 67.8 68 48.5
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 2.6e-07 61.2 142 31.0
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.9e-07 60.1 63 52.4
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 7.7e-07 59.7 194 30.4
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 6.5e-06 56.6 67 49.3


User provided reference genes

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