Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.3e-286 988.4 565 100.0
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 6.4e-265 917.1 565 92.9
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 9.2e-264 913.3 565 89.4
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.6e-246 854.0 585 85.0
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.2e-215 753.4 577 78.2
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 1.1e-128 464.5 677 51.7
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.0e-117 427.2 644 51.2
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 7.2e-91 339.0 500 47.0
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 6.3e-87 325.9 653 41.7
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.8e-86 324.3 660 40.3
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 8.2e-79 298.9 634 40.1
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 5.5e-75 286.2 469 47.8
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 2.7e-74 283.9 496 44.2
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 8.0e-74 282.3 514 43.6
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.8e-73 281.2 446 48.4
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 2.3e-73 280.8 646 40.2
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 6.3e-71 272.7 447 44.5
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.1e-70 271.9 636 38.2
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 4.5e-69 266.5 356 53.9
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 7.7e-69 265.8 649 35.3
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 7.7e-69 265.8 609 38.6
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 7.7e-69 265.8 638 36.8
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.9e-68 263.8 611 38.1
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 5.0e-68 263.1 480 42.9
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 6.5e-68 262.7 624 39.3
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.9e-67 261.2 637 36.7
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 1.9e-67 261.2 415 48.2
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 2.5e-67 260.8 626 34.5
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 6.1e-66 256.1 669 36.6
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 1.8e-65 254.6 651 35.6
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 4.0e-65 253.4 295 52.5
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 4.0e-65 253.4 443 44.7
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 8.8e-65 252.3 468 42.5
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 2.6e-64 250.8 512 41.6
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 9.8e-64 248.8 584 35.8
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 2.2e-63 247.7 640 36.7
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 4.8e-63 246.5 651 35.3
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 1.2e-61 241.9 322 53.4
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.5e-61 240.4 403 45.7
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 2.3e-60 237.7 349 47.0
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 2.9e-60 237.3 349 43.8
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 1.9e-59 234.6 437 43.7
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.0e-57 228.8 347 49.0
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.8e-57 228.0 606 38.0
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 2.3e-57 227.6 590 34.4
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 6.8e-57 226.1 422 40.3
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 1.7e-55 221.5 614 37.3
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 3.7e-55 220.3 409 41.3
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.1e-54 218.8 507 37.5
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.0e-53 214.5 617 36.0
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 8.6e-52 209.1 467 37.5
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.5e-51 208.4 595 36.8
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 1.9e-51 208.0 476 34.5
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.2e-50 205.3 368 38.9
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.1e-50 204.5 383 39.2
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 1.0e-49 202.2 447 40.7
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.3e-49 201.1 339 43.4
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.2e-49 199.9 316 45.6
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.2e-48 198.7 316 46.2
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.5e-48 198.4 603 32.0
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 3.4e-48 197.2 316 44.3
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 3.4e-48 197.2 316 46.2
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 5.8e-48 196.4 322 41.0
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 5.8e-48 196.4 399 41.1
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 7.5e-48 196.1 316 44.3
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 9.8e-48 195.7 324 43.5
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.3e-47 195.3 402 39.3
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 1.7e-47 194.9 318 44.0
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.7e-47 194.9 323 43.0
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 4.9e-47 193.4 315 46.3
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 4.9e-47 193.4 315 46.3
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 6.4e-47 193.0 328 43.0
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 8.3e-47 192.6 580 33.6
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 8.3e-47 192.6 604 32.8
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 5.4e-46 189.9 326 48.2
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 9.2e-46 189.1 469 35.8
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 9.2e-46 189.1 469 35.8
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.2e-45 188.7 409 37.9
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.7e-45 187.6 333 42.6
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 4.6e-45 186.8 432 38.4
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 4.6e-45 186.8 431 36.4
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.0e-44 185.7 462 34.0
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 1.3e-44 185.3 299 46.8
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 2.3e-44 184.5 318 46.5
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 5.0e-44 183.3 462 32.7
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 8.6e-44 182.6 369 40.9
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 7.3e-43 179.5 463 33.9
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 7.3e-43 179.5 430 36.0
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 9.5e-43 179.1 311 45.0
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.2e-42 178.7 517 33.8
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 3.6e-42 177.2 459 31.4
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 8.0e-42 176.0 584 29.8
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 6.8e-41 172.9 344 42.4
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.6e-40 171.0 316 41.8
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 3.4e-40 170.6 589 35.3
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 5.8e-40 169.9 565 33.6
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.3e-39 168.7 306 44.1
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 2.2e-39 167.9 343 39.4
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 8.3e-39 166.0 402 35.3
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 7.0e-38 162.9 208 47.6
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 6.2e-34 149.8 269 37.9
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 8.1e-34 149.4 302 38.4
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 3.1e-33 147.5 462 34.2
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 3.1e-33 147.5 320 35.0
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 2.0e-32 144.8 596 31.7
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 1.7e-31 141.7 795 25.4
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 8.3e-31 139.4 537 33.0
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.4e-30 138.7 286 39.2
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.2e-29 135.6 368 32.6
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 6.0e-29 133.3 343 35.0
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.0e-28 132.5 492 30.5
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.1e-27 129.0 545 33.0
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 3.3e-27 127.5 364 31.6
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 2.1e-26 124.8 161 59.0
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 5.2e-25 120.2 243 36.6
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 6.0e-21 106.7 198 43.9
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 5.1e-20 103.6 352 36.1
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 6.6e-20 103.2 442 27.8
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.9e-19 101.7 346 28.6
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 2.5e-19 101.3 462 28.4
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 2.8e-18 97.8 327 31.2
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 3.8e-15 87.4 96 45.8
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.9e-14 85.1 341 31.4
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 3.2e-14 84.3 455 27.7
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 4.2e-14 84.0 74 59.5
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 7.1e-14 83.2 352 27.8
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.0e-12 79.3 337 28.2
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 2.3e-12 78.2 215 34.0
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 3.9e-12 77.4 342 30.1
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 5.1e-12 77.0 229 31.0
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 2.5e-11 74.7 99 43.4
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 4.3e-11 73.9 85 47.1
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 1.6e-10 72.0 245 28.6
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 4.8e-10 70.5 470 25.5
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 9.0e-09 66.2 260 37.3
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 8.4e-07 59.7 243 25.9
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 1.1e-06 59.3 275 28.0
Glyma.20G070600 Glycine max HOM05D003044 ORTHO05D001869 3.2e-06 57.8 268 25.0
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 3.2e-06 57.8 261 26.8
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 5.4e-06 57.0 289 27.3
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 5.4e-06 57.0 270 29.6
Oeu025606.1 Olea europaea HOM05D003044 ORTHO05D001869 7.1e-06 56.6 250 26.0


User provided reference genes

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