Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.5e-120 434.5 246 100.0
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.8e-115 419.5 246 97.6
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 4.6e-111 404.8 246 93.9
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 8.7e-110 400.6 246 93.9
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.1e-107 393.7 246 91.9
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 5.1e-102 374.8 246 88.2
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 7.2e-80 301.2 224 74.6
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 2.0e-77 293.1 212 74.1
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.1e-64 250.8 227 62.1
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 2.5e-64 249.6 211 67.3
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.3e-64 249.2 229 62.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 6.4e-60 235.0 235 63.0
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 1.8e-59 233.4 223 60.1
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.8e-59 233.4 254 56.7
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 3.2e-59 232.6 232 59.1
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 7.0e-59 231.5 230 58.7
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 9.2e-59 231.1 234 61.5
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.6e-58 230.3 218 61.5
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.0e-58 229.9 212 61.3
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.0e-58 229.9 217 63.1
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.0e-57 227.6 223 60.1
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 6.6e-57 224.9 223 57.4
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.1e-56 224.2 227 61.7
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 2.5e-56 223.0 214 63.1
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 3.3e-56 222.6 228 61.0
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 4.3e-56 222.2 205 61.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 9.5e-56 221.1 226 61.9
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 2.1e-55 219.9 216 61.1
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 2.1e-55 219.9 218 60.1
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.8e-55 219.5 232 59.5
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.6e-55 219.2 228 58.3
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 6.2e-55 218.4 224 58.9
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 1.0e-54 217.6 271 50.2
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.8e-54 216.9 217 59.0
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 4.0e-54 215.7 230 54.3
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 5.2e-54 215.3 245 53.1
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 5.2e-54 215.3 221 60.2
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 5.2e-54 215.3 213 60.1
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 6.8e-54 214.9 227 61.7
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 6.8e-54 214.9 206 60.7
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.0e-53 213.4 220 57.7
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 3.4e-53 212.6 208 62.5
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 7.5e-53 211.5 231 55.0
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 7.5e-53 211.5 226 54.9
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 7.5e-53 211.5 226 56.2
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.3e-52 210.7 195 61.5
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 3.7e-52 209.1 204 61.3
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 3.7e-52 209.1 202 58.9
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 8.3e-52 208.0 213 58.2
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.9e-51 206.8 206 59.2
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 3.2e-51 206.1 195 60.5
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.2e-50 204.1 233 56.2
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.6e-50 203.8 223 55.2
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 3.0e-49 199.5 265 49.4
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 6.6e-49 198.4 206 61.2
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 6.6e-49 198.4 244 54.9
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 6.6e-49 198.4 188 61.2
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.5e-48 197.2 247 49.8
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.9e-48 196.8 261 50.2
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 3.3e-48 196.1 256 50.4
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 4.3e-48 195.7 265 49.1
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.2e-47 194.1 235 51.9
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 2.1e-47 193.4 202 55.0
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 2.8e-47 193.0 235 51.5
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 4.7e-47 192.2 233 52.4
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 4.0e-46 189.1 265 48.3
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 6.8e-46 188.3 220 49.5
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 6.8e-46 188.3 245 48.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 8.9e-46 188.0 228 56.6
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 8.9e-46 188.0 233 50.6
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 1.5e-45 187.2 331 42.0
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 3.4e-45 186.0 231 50.6
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 7.5e-45 184.9 149 67.1
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 9.8e-45 184.5 231 50.2
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.7e-44 183.7 239 50.2
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 2.2e-44 183.3 232 50.9
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 2.9e-44 183.0 220 51.8
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 2.9e-44 183.0 210 53.8
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 8.3e-44 181.4 278 44.2
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.9e-43 180.3 203 53.7
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.9e-43 180.3 175 57.7
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 2.4e-43 179.9 227 52.9
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 4.1e-43 179.1 266 47.7
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 4.1e-43 179.1 208 53.4
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.6e-42 177.2 148 64.9
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 4.6e-42 175.6 251 47.8
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 1.3e-41 174.1 240 47.9
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.7e-41 173.7 229 50.7
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.3e-41 173.3 227 48.0
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 3.0e-41 172.9 227 48.0
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.9e-40 170.2 224 48.7
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 3.3e-40 169.5 204 51.5
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.6e-39 167.2 199 49.7
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.8e-39 166.4 172 57.6
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.0e-37 160.2 206 50.0
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-36 157.1 227 45.4
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.7e-36 157.1 238 46.2
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.2e-36 156.8 251 41.0
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.2e-36 156.8 208 49.5
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 4.9e-36 155.6 208 47.1
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 8.4e-36 154.8 172 53.5
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.4e-35 154.1 149 56.4
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.9e-35 153.7 174 54.0
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.9e-35 153.7 219 47.9
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.9e-35 153.7 219 47.9
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 2.1e-34 150.2 191 49.2
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.7e-34 149.8 217 47.5
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.7e-34 149.8 224 44.6
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 3.5e-34 149.4 225 44.0
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 5.1e-33 145.6 201 49.8
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 5.1e-33 145.6 270 40.0
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 6.6e-33 145.2 223 43.9
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.6e-33 145.2 208 44.7
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 8.6e-33 144.8 255 40.4
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 2.5e-32 143.3 229 42.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 9.6e-32 141.4 226 43.4
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 4.7e-31 139.0 236 44.1
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 4.0e-30 136.0 217 40.6
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 1.2e-29 134.4 203 42.4
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 1.3e-28 131.0 153 52.3
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 2.9e-28 129.8 169 46.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.8e-28 129.4 195 45.6
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 6.4e-28 128.6 167 49.7
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.4e-27 126.7 232 38.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.2e-27 126.3 174 48.9
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 6.0e-26 122.1 226 42.5
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 5.1e-25 119.0 174 46.0
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 5.6e-24 115.5 141 50.4
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-23 114.0 194 43.8
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.6e-23 114.0 194 43.8
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.1e-23 113.6 256 35.5
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.1e-23 113.6 256 35.5
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 4.8e-23 112.5 202 41.6
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.4e-22 110.2 116 56.0
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 5.3e-22 109.0 175 44.6
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 7.6e-21 105.1 73 71.2
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-20 104.4 186 43.5
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 2.2e-20 103.6 186 41.4
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 2.9e-20 103.2 164 43.3
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 3.8e-20 102.8 127 49.6
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.9e-20 102.4 86 62.8
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 4.2e-19 99.4 195 41.0
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 3.0e-17 93.2 186 38.7
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 3.9e-17 92.8 151 43.7
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 2.5e-16 90.1 169 42.0
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 3.3e-16 89.7 158 39.2
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-16 88.2 63 68.3
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-16 88.2 63 68.3
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-16 88.2 63 68.3
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-16 88.2 63 68.3
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 3.6e-15 86.3 60 70.0
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 3.6e-15 86.3 168 38.7
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 4.8e-15 85.9 56 75.0
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.8e-15 85.9 58 70.7
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 6.2e-15 85.5 56 75.0
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-14 84.3 56 73.2
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 6.9e-14 82.0 187 37.4
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 7.6e-13 78.6 187 36.9
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.7e-12 77.4 97 51.5
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 4.9e-12 75.9 54 68.5
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.9e-11 73.9 51 68.6
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-11 72.8 46 76.1
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 4.2e-11 72.8 46 76.1
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 4.6e-10 69.3 51 66.7
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 1.0e-09 68.2 189 30.2
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.3e-09 67.0 88 50.0
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.5e-08 63.5 136 38.2
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.3e-07 61.2 76 51.3
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 3.7e-07 59.7 51 60.8
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.7e-07 59.7 87 41.4
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 1.1e-06 58.2 36 77.8
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 1.1e-06 58.2 140 32.1
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 3.1e-06 56.6 46 58.7


User provided reference genes

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