Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2574 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.1e-119 433.7 279 100.0
FAN24G2023 Fragaria x ananassa HOM05D000520 ORTHO05D000399 7.4e-105 384.4 282 88.3
FAN27G0616 Fragaria x ananassa HOM05D000520 ORTHO05D000399 8.4e-101 370.9 310 80.6
FvH4_2g25240 Fragaria vesca HOM05D000520 ORTHO05D000399 2.1e-96 356.3 293 85.3
FAN20G2780 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.4e-95 353.6 290 83.8
RcHm_v2.0_Chr6g0293381 Rosa chinensis HOM05D000520 ORTHO05D000399 9.4e-76 287.7 293 74.4
FAN16G0037 Fragaria x ananassa HOM05D000520 ORTHO05D000399 5.9e-46 188.7 270 63.0
Prupe.8G257200 Prunus persica HOM05D000520 ORTHO05D000399 4.5e-38 162.5 303 54.8
MD03G1282300 Malus domestica HOM05D000520 ORTHO05D000399 3.8e-37 159.5 309 55.3
MD11G1304000 Malus domestica HOM05D000520 ORTHO05D000399 2.0e-30 137.1 310 48.7
Atru.chr5.1202 Acer truncatum HOM05D000520 ORTHO05D000399 1.7e-24 117.5 300 43.0
CiPaw.07G105600 Carya illinoinensis HOM05D000520 ORTHO05D000399 1.7e-24 117.5 300 48.0
Ciclev10021017m.g Citrus clementina HOM05D000520 ORTHO05D000399 8.3e-24 115.2 280 38.2
QL12p026987 Quercus lobata HOM05D000520 ORTHO05D000399 3.2e-23 113.2 302 46.7
Manes.01G216400 Manihot esculenta HOM05D000520 ORTHO05D000399 1.1e-20 104.8 304 42.4
Thecc.01G296000 Theobroma cacao HOM05D000520 ORTHO05D000399 3.3e-20 103.2 299 49.2
TWI59G1036 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 4.3e-20 102.8 298 42.3
Potri.014G132000 Populus trichocarpa HOM05D000520 ORTHO05D000399 7.3e-20 102.1 304 39.8
Duzib133G1196 Durio zibethinus HOM05D000520 ORTHO05D000399 2.1e-19 100.5 318 39.9
CiPaw.08G097700 Carya illinoinensis HOM05D000520 ORTHO05D000399 2.8e-19 100.1 315 41.3
Sabra14G0098100 Salix brachista HOM05D000520 ORTHO05D000399 1.1e-18 98.2 303 42.6
Haze_04884 Corylus avellana HOM05D000520 ORTHO05D000399 3.1e-18 96.7 297 45.5
Potri.002G206900 Populus trichocarpa HOM05D000520 ORTHO05D000399 2.0e-17 94.0 303 42.9
Dinv33031 Davidia involucrata HOM05D000520 ORTHO05D000399 5.8e-17 92.4 292 46.9
Gorai.008G010400 Gossypium raimondii HOM05D000520 ORTHO05D000399 7.5e-17 92.0 308 37.0
FvH4_3g05420 Fragaria vesca HOM05D000520 ORTHO05D000399 9.9e-17 91.7 80 66.2
Manes.05G064600 Manihot esculenta HOM05D000520 ORTHO05D000399 2.2e-16 90.5 302 37.1
COL.COLO4_23389 Corchorus olitorius HOM05D000520 ORTHO05D000399 4.9e-16 89.4 291 40.2
Gorai.004G088800 Gossypium raimondii HOM05D000520 ORTHO05D000399 8.3e-16 88.6 303 33.0
CSS0021736 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 4.1e-15 86.3 287 44.6
Duzib138G0686 Durio zibethinus HOM05D000520 ORTHO05D000399 4.1e-15 86.3 301 48.5
CANSAT25G1223 Cannabis sativa HOM05D000520 ORTHO05D000399 1.6e-14 84.3 303 47.9
TAR636G3055 Trochodendron aralioides HOM05D000520 ORTHO05D000399 2.7e-14 83.6 315 35.9
CANSAT25G1513 Cannabis sativa HOM05D000520 ORTHO05D000399 4.6e-14 82.8 287 49.1
Gohir.D08G084300 Gossypium hirsutum HOM05D000520 ORTHO05D000399 7.8e-14 82.0 303 33.3
Lalb_Chr15g0078631 Lupinus albus HOM05D000520 ORTHO05D000399 1.0e-13 81.6 312 37.8
Rhsim01G0283400 Rhododendron simsii HOM05D000520 ORTHO05D000399 2.3e-13 80.5 300 36.7
TWI14G0439 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 5.1e-13 79.3 301 35.5
Actinidia24838 Actinidia chinensis HOM05D000520 ORTHO05D000399 6.6e-13 79.0 280 33.9
Gohir.D12G010500 Gossypium hirsutum HOM05D000520 ORTHO05D000399 6.6e-13 79.0 308 35.4
vmacro14992 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 8.6e-13 78.6 298 47.7
Phvul.001G205300 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 1.5e-12 77.8 302 39.1
PGR044G0037 Punica granatum HOM05D000520 ORTHO05D000399 3.3e-12 76.6 302 31.1
GSVIVG01027966001 Vitis vinifera HOM05D000520 ORTHO05D000399 4.3e-12 76.3 303 35.3
Dinv19722 Davidia involucrata HOM05D000520 ORTHO05D000399 9.5e-12 75.1 293 38.6
Eucgr.K03459 Eucalyptus grandis HOM05D000520 ORTHO05D000399 9.5e-12 75.1 304 46.4
Glyma.03G212400 Glycine max HOM05D000520 ORTHO05D000399 9.5e-12 75.1 301 36.9
Gohir.A08G075200 Gossypium hirsutum HOM05D000520 ORTHO05D000399 9.5e-12 75.1 295 34.9
VMungo1383G1757 Vigna mungo HOM05D000520 ORTHO05D000399 9.5e-12 75.1 289 41.5
Glyma.19G209500 Glycine max HOM05D000520 ORTHO05D000399 4.7e-11 72.8 303 41.3
Nn3g21431 Nelumbo nucifera HOM05D000520 ORTHO05D000399 8.1e-11 72.0 88 50.0
Dinv29767 Davidia involucrata HOM05D000520 ORTHO05D000399 1.1e-10 71.6 323 27.9
DCAR_012387 Daucus carota HOM05D000520 ORTHO05D000399 1.8e-10 70.9 294 30.6
vmacro19619 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 2.4e-10 70.5 66 57.6
Actinidia21058 Actinidia chinensis HOM05D000520 ORTHO05D000399 4.0e-10 69.7 295 38.0
Gohir.A12G010300 Gossypium hirsutum HOM05D000520 ORTHO05D000399 4.0e-10 69.7 311 32.8
Actinidia40258 Actinidia chinensis HOM05D000520 ORTHO05D000399 5.2e-10 69.3 83 50.6
DCAR_024565 Daucus carota HOM05D000520 ORTHO05D000399 6.8e-10 68.9 309 38.2
HPP92_017218 Vanilla planifolia HOM05D000668 ORTHO05D000399 8.9e-10 68.6 79 50.6
Sabra02G0152800 Salix brachista HOM05D000520 ORTHO05D000399 1.2e-09 68.2 307 44.3
Gohir.A08G101032 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.5e-09 67.8 305 36.4
Manes.03G194600 Manihot esculenta HOM05D000520 ORTHO05D000399 2.0e-09 67.4 278 29.9
Aqoxy5G00713 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 2.6e-09 67.0 320 35.0
Haze_01213 Corylus avellana HOM05D000520 ORTHO05D000399 2.6e-09 67.0 120 41.7
MBI19_g29233_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 3.4e-09 66.6 80 48.8
Rhsim04G0221200 Rhododendron simsii HOM05D000520 ORTHO05D000399 3.4e-09 66.6 45 71.1
Solyc01g066880.3 Solanum lycopersicum HOM05D000520 ORTHO05D000399 3.4e-09 66.6 63 55.6
Sopen01g028480 Solanum pennellii HOM05D000520 ORTHO05D000399 3.4e-09 66.6 63 55.6
Rhsim05G0141100 Rhododendron simsii HOM05D000520 ORTHO05D000399 1.3e-08 64.7 81 46.9
CDE02G4349 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 2.2e-08 63.9 98 43.9
Medtr7g108560 Medicago truncatula HOM05D000520 ORTHO05D000399 2.2e-08 63.9 121 46.3
Hund18128 Selenicereus undatus HOM05D000520 ORTHO05D000399 2.2e-08 63.9 116 39.7
Sc16g0008600 Simmondsia chinensis HOM05D000520 ORTHO05D000399 2.2e-08 63.9 83 45.8
TPR.G13851 Trifolium pratense HOM05D000520 ORTHO05D000399 2.2e-08 63.9 115 39.1
Dinv40323 Davidia involucrata HOM05D000520 ORTHO05D000399 2.9e-08 63.5 84 47.6
Dinv30800 Davidia involucrata HOM05D000520 ORTHO05D000399 3.8e-08 63.2 83 45.8
HanXRQChr03g0080771 Helianthus annuus HOM05D000520 ORTHO05D000399 4.9e-08 62.8 80 46.2
Lj1A33G81 Lonicera japonica HOM05D000520 ORTHO05D000399 4.9e-08 62.8 259 42.1
VMungo1309G2144 Vigna mungo HOM05D000520 ORTHO05D000399 6.4e-08 62.4 61 52.5
Medtr2g436830 Medicago truncatula HOM05D000520 ORTHO05D000399 8.4e-08 62.0 85 47.1
Hma1.2p1_1292F.1_g273650 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 1.1e-07 61.6 66 48.5
Hma1.2p1_1374F.1_g278785 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 1.1e-07 61.6 66 48.5
Prupe.6G321400 Prunus persica HOM05D000520 ORTHO05D000399 1.1e-07 61.6 63 50.8
TWI12G0219 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.1e-07 61.6 61 54.1
Lj6g0005585 Lotus japonicus HOM05D000520 ORTHO05D000399 1.4e-07 61.2 113 39.8
Phvul.009G247600 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 1.9e-07 60.8 93 44.1
MSTRG.3922 Avicennia marina HOM05D000520 ORTHO05D000399 2.4e-07 60.5 102 37.3
AUR62000774 Chenopodium quinoa HOM05D000520 ORTHO05D000399 2.4e-07 60.5 61 49.2
Hma1.2p1_2670F.1_g326640 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 2.4e-07 60.5 295 27.8
Psat1g153560 Pisum sativum HOM05D000520 ORTHO05D000399 2.4e-07 60.5 97 40.2
vmacro22973 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 2.4e-07 60.5 74 50.0
Cpa.g.sc48.88 Carica papaya HOM05D000520 ORTHO05D000399 3.2e-07 60.1 61 52.5
CSS0032030 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 4.1e-07 59.7 61 47.5
HPP92_006926 Vanilla planifolia HOM05D000520 ORTHO05D000399 4.1e-07 59.7 107 33.6
MSTRG.10091 Avicennia marina HOM05D000520 ORTHO05D000399 5.4e-07 59.3 320 30.9
Hund00943 Selenicereus undatus HOM05D000520 ORTHO05D000399 5.4e-07 59.3 97 40.2
Ah.04g161080 Amaranthus hybridus HOM05D000520 ORTHO05D000399 7.1e-07 58.9 85 44.7
EL10Ac4g09925 Beta vulgaris HOM05D000520 ORTHO05D000399 7.1e-07 58.9 86 40.7
Hund21707 Selenicereus undatus HOM05D000520 ORTHO05D000399 7.1e-07 58.9 64 45.3
CSS0026985 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 9.2e-07 58.5 55 52.7
CDE11G0338 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 9.2e-07 58.5 322 25.8
MELO3C006660.2 Cucumis melo HOM05D000520 ORTHO05D000399 9.2e-07 58.5 66 48.5
GSVIVG01017753001 Vitis vinifera HOM05D000520 ORTHO05D000399 9.2e-07 58.5 246 29.7
MELO3C004225.2 Cucumis melo HOM05D000520 ORTHO05D000399 1.2e-06 58.2 66 51.5
Glyma.09G045200 Glycine max HOM05D000520 ORTHO05D000399 1.2e-06 58.2 61 49.2
Glyma.10G152100 Glycine max HOM05D000520 ORTHO05D000399 1.2e-06 58.2 63 50.8
Glyma.15G147400 Glycine max HOM05D000520 ORTHO05D000399 1.6e-06 57.8 61 49.2
HanXRQChr13g0411351 Helianthus annuus HOM05D000520 ORTHO05D000399 1.6e-06 57.8 61 49.2
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.6e-06 57.8 227 30.0
Lj6C675T3 Lonicera japonica HOM05D000520 ORTHO05D000399 1.6e-06 57.8 295 38.6
QL06p008798 Quercus lobata HOM05D000520 ORTHO05D000399 1.6e-06 57.8 310 32.3
GSVIVG01031153001 Vitis vinifera HOM05D000520 ORTHO05D000399 1.6e-06 57.8 61 49.2
Manes.09G169700 Manihot esculenta HOM05D000520 ORTHO05D000399 2.1e-06 57.4 61 50.8
HPP92_010694 Vanilla planifolia HOM05D000520 ORTHO05D000399 2.1e-06 57.4 63 50.8
arahy.Tifrunner.gnm1.ann1.MC15QU Arachis hypogaea HOM05D000520 ORTHO05D000399 2.7e-06 57.0 66 45.5
Lsat_1_v5_gn_5_53640 Lactuca sativa HOM05D000520 ORTHO05D000399 2.7e-06 57.0 82 42.7
Nn4g26198 Nelumbo nucifera HOM05D000520 ORTHO05D000399 2.7e-06 57.0 56 55.4
Phvul.003G104900 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 2.7e-06 57.0 64 43.8
SalBow7G2560 Salvia bowleyana HOM05D000520 ORTHO05D000399 2.7e-06 57.0 61 45.9
Atru.chr2.24 Acer truncatum HOM05D000520 ORTHO05D000399 3.5e-06 56.6 85 51.8
Actinidia24329 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.5e-06 56.6 282 42.2
CANSAT54G1029 Cannabis sativa HOM05D000520 ORTHO05D000399 3.5e-06 56.6 100 39.0
Lj1g0026141 Lotus japonicus HOM05D000520 ORTHO05D000399 3.5e-06 56.6 258 35.7
SGA_v2.0_scaffold67G22639 Striga asiatica HOM05D000520 ORTHO05D000399 3.5e-06 56.6 61 47.5
Zm00001eb125730 Zea mays HOM05D000520 ORTHO05D006660 3.5e-06 56.6 58 48.3
Zm00001eb267770 Zea mays HOM05D000520 ORTHO05D000399 3.5e-06 56.6 79 44.3
Aa31LG11G9430 Aethionema arabicum HOM05D000520 ORTHO05D000399 4.6e-06 56.2 63 44.4
arahy.Tifrunner.gnm1.ann1.CT4NDI Arachis hypogaea HOM05D000520 ORTHO05D000399 4.6e-06 56.2 61 49.2
Cpa.g.sc9.203 Carica papaya HOM05D000520 ORTHO05D000399 4.6e-06 56.2 321 41.4
Lsat_1_v5_gn_9_87041 Lactuca sativa HOM05D000520 ORTHO05D000399 4.6e-06 56.2 83 43.4
Phvul.007G196900 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 4.6e-06 56.2 103 36.9
Sabra10G0014300 Salix brachista HOM05D000520 ORTHO05D000399 4.6e-06 56.2 271 26.9
HPP92_018390 Vanilla planifolia HOM05D000520 ORTHO05D000399 4.6e-06 56.2 61 47.5
Ah.15g093330 Amaranthus hybridus HOM05D000520 ORTHO05D000399 6.0e-06 55.8 116 36.2
arahy.Tifrunner.gnm1.ann1.Z22JU0 Arachis hypogaea HOM05D000520 ORTHO05D000399 6.0e-06 55.8 96 39.6
Migut.G00167 Erythranthe guttata HOM05D000520 ORTHO05D000399 6.0e-06 55.8 328 27.7
Glyma.07G248100 Glycine max HOM05D000520 ORTHO05D000399 6.0e-06 55.8 61 44.3
Glyma.17G026000 Glycine max HOM05D000520 ORTHO05D000399 6.0e-06 55.8 61 44.3
Lsat_1_v5_gn_8_54740 Lactuca sativa HOM05D000520 ORTHO05D000399 6.0e-06 55.8 309 32.4
PGSC0003DMG400011344 Solanum tuberosum HOM05D000520 ORTHO05D000399 6.0e-06 55.8 288 27.8
PGSC0003DMG400028581 Solanum tuberosum HOM05D000520 ORTHO05D000399 6.0e-06 55.8 58 51.7
arahy.Tifrunner.gnm1.ann1.ABWE2S Arachis hypogaea HOM05D000520 ORTHO05D000399 7.8e-06 55.5 54 53.7
CANSAT78G2123 Cannabis sativa HOM05D000520 ORTHO05D000399 7.8e-06 55.5 88 40.9
Cc02_g33120 Coffea canephora HOM05D000520 ORTHO05D000399 7.8e-06 55.5 66 47.0
HanXRQChr04g0118151 Helianthus annuus HOM05D000520 ORTHO05D000399 7.8e-06 55.5 270 40.7
PSO832G3103 Papaver somniferum HOM05D000520 ORTHO05D000399 7.8e-06 55.5 62 48.4
PGR031G0260 Punica granatum HOM05D000520 ORTHO05D000399 7.8e-06 55.5 101 37.6
Sed0010325 Sechium edule HOM05D000520 ORTHO05D000399 7.8e-06 55.5 57 52.6
Sed0022713 Sechium edule HOM05D000520 ORTHO05D000399 7.8e-06 55.5 95 36.8
VMungo1215G1385 Vigna mungo HOM05D000520 ORTHO05D000399 7.8e-06 55.5 61 45.9


User provided reference genes

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