Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2140.5 1104 100.0
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2050.0 1104 95.9
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 2043.9 1104 95.9
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2040.0 1104 95.7
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1893.6 1104 88.4
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1881.7 1104 88.0
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1650.2 881 95.7
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1570.4 1104 72.7
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1553.1 1108 72.6
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1300.0 1090 62.2
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1292.3 1121 61.5
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1274.2 1050 63.0
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1268.1 1103 60.2
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1263.4 1091 60.4
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1239.9 1119 60.1
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1234.2 1106 59.0
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1206.8 1102 58.5
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1203.3 1101 57.9
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1200.3 1077 59.5
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1196.4 1090 58.3
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1187.9 1097 57.3
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1187.2 1099 57.2
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1175.2 1104 56.2
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1175.2 1104 56.7
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1172.5 1097 56.6
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1169.8 1103 56.6
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1166.4 1103 56.6
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1161.0 1095 55.3
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1156.0 1096 55.5
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1153.3 1113 56.7
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1138.6 1107 55.5
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1134.8 1104 55.3
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1130.5 1098 55.3
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1125.5 1097 54.0
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1112.1 1100 54.9
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1108.6 1104 54.0
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1099.0 1103 53.9
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1096.3 1104 53.6
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1094.7 1104 54.1
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1092.4 1037 54.8
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 0.0e+00 1090.9 1100 55.3
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 7.0e-308 1060.8 1096 51.3
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 2.7e-307 1058.9 619 89.0
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 5.9e-307 1057.7 1092 51.7
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 5.9e-307 1057.7 1153 52.1
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 8.5e-306 1053.9 1124 51.2
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 1.5e-305 1053.1 1100 51.7
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 8.0e-304 1047.3 1125 49.2
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 3.4e-302 1042.0 1121 49.9
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 5.7e-302 1041.2 1023 55.1
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 2.8e-301 1038.9 1095 51.4
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 4.1e-300 1035.0 1092 50.9
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 5.4e-300 1034.6 1101 51.2
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 1.3e-298 1030.0 1099 51.3
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 1.7e-298 1029.6 1106 49.6
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 8.6e-298 1027.3 1128 50.3
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 3.0e-295 1018.8 1122 50.1
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 2.0e-294 1016.1 1120 50.1
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 2.6e-286 989.2 1110 50.1
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 4.4e-286 988.4 917 56.3
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.7e-285 986.5 1067 50.0
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 1.9e-284 983.0 1121 47.7
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.8e-280 969.1 964 55.4
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 1.2e-278 963.8 946 56.6
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 2.6e-278 962.6 1035 50.2
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 7.0e-276 954.5 1094 48.6
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.3e-269 933.7 948 55.1
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.9e-268 929.9 1103 48.0
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 1.9e-265 919.8 1109 47.4
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 1.2e-264 917.1 1114 47.0
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 3.1e-263 912.5 822 58.5
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 7.8e-259 897.9 971 51.0
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 1.4e-255 887.1 1091 45.2
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 3.4e-254 882.5 1158 45.0
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 6.4e-253 878.2 763 59.5
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 2.4e-252 876.3 1118 45.1
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 1.1e-247 860.9 1129 43.6
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 1.5e-246 857.1 896 51.5
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 5.3e-231 805.4 1106 42.2
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 6.9e-231 805.1 960 46.8
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 8.7e-226 788.1 1092 41.8
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 2.6e-201 706.8 734 53.7
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 5.7e-201 705.7 769 49.5
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.9e-197 693.3 793 50.2
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.6e-181 638.6 385 86.2
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 5.6e-172 609.4 1105 35.6
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 2.1e-171 607.4 727 48.8
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.0e-170 603.2 927 42.1
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 7.1e-151 539.3 1143 32.0
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 4.7e-147 526.6 705 43.8
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 3.8e-144 516.9 1348 28.3
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 3.9e-125 453.8 451 56.5
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.3e-124 450.7 463 54.2
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.6e-102 377.5 340 60.3
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.5e-100 372.1 1228 28.6
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.4e-98 365.5 339 59.9
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 3.2e-95 354.4 331 58.0
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.7e-91 340.9 339 54.3
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.7e-89 333.2 591 38.7
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.5e-81 307.4 297 54.9
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 4.2e-79 300.8 298 53.0
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 3.4e-76 291.2 291 53.3
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 4.0e-69 267.7 281 50.5
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 4.1e-66 257.7 229 61.6
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 8.9e-61 240.0 359 39.0
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 9.8e-60 236.5 127 94.5
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 3.1e-53 214.9 261 48.7
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 4.1e-50 204.5 130 86.2
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.0e-49 202.2 130 85.4
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 2.7e-49 201.8 184 53.8
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.6e-49 201.1 130 85.4
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.3e-43 183.0 369 37.4
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.7e-43 182.6 204 48.0
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 5.4e-42 177.6 148 57.4
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.0e-40 173.3 299 38.8
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 1.3e-40 172.9 312 36.5
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 2.3e-40 172.2 138 63.0
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 3.0e-40 171.8 158 51.9
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.1e-39 169.9 198 43.9
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.5e-36 159.5 496 28.6
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 1.1e-34 153.3 459 26.8
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.2e-28 133.3 131 55.7
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 2.6e-20 105.5 153 39.9
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.2e-17 96.7 161 39.1
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.3e-15 88.6 49 91.8
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-15 87.4 233 28.3
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.6e-15 87.0 83 59.0
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.5e-12 79.7 85 45.9
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 6.4e-11 74.3 62 56.5
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.1e-09 69.3 94 39.4
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 3.5e-09 68.6 118 39.8
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 3.5e-09 68.6 400 21.0
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 5.6e-07 61.2 43 67.4


User provided reference genes

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