Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.9e-303 1045.0 525 100.0
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.9e-296 1021.1 525 98.1
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.4e-293 1012.3 525 97.5
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.0e-292 1008.4 525 97.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.0e-292 1008.4 525 97.3
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 7.2e-279 963.4 523 93.7
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 8.1e-246 853.6 525 83.2
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 3.2e-242 841.6 525 82.5
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-234 816.6 515 81.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 3.1e-221 771.9 538 74.9
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.6e-217 759.6 525 75.0
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 6.6e-216 754.2 528 74.4
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.6e-215 750.4 527 74.8
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 9.6e-215 750.4 527 74.8
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.6e-214 748.4 525 74.3
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 8.4e-211 737.3 543 72.4
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.1e-209 732.6 527 71.7
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.3e-208 729.2 522 73.0
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 6.2e-206 721.1 502 72.7
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.1e-205 718.8 527 71.3
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 3.4e-204 715.3 516 72.3
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 5.8e-204 714.5 517 72.1
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.3e-203 713.4 523 70.9
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.2e-203 712.6 507 73.6
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.2e-203 712.6 507 73.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.1e-202 710.3 507 73.2
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.5e-202 709.1 518 71.4
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.2e-201 706.8 519 71.1
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.6e-201 706.4 521 71.2
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.7e-201 705.7 524 70.6
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.6e-201 704.9 515 71.3
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.0e-200 703.7 525 69.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.5e-199 699.1 519 70.7
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 5.7e-199 698.0 532 69.2
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 6.3e-198 694.5 520 69.6
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.4e-197 693.3 546 68.1
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 5.3e-197 691.4 570 65.1
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 3.4e-196 688.7 530 68.1
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.1e-193 679.5 539 66.8
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.3e-192 676.8 492 71.3
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 8.7e-192 674.1 516 68.4
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.5e-191 672.5 531 68.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 5.7e-191 671.4 530 67.2
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 5.7e-191 671.4 514 68.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 7.4e-191 671.0 529 67.3
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.4e-189 666.0 522 67.6
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 5.3e-189 664.8 534 65.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.0e-188 662.9 515 68.7
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.5e-186 656.0 513 66.7
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.6e-185 652.1 514 67.1
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.7e-182 643.3 528 65.3
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 6.3e-182 641.3 513 65.9
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.6e-180 636.0 515 66.4
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 8.5e-179 630.9 441 74.4
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.7e-177 625.9 531 65.2
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 4.7e-177 625.2 518 64.5
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 3.9e-176 622.1 557 61.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 7.0e-173 611.3 515 62.1
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.3e-171 607.1 534 60.7
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-169 600.5 522 61.5
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.0e-168 597.4 539 59.7
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 5.2e-168 595.1 516 64.3
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.8e-165 586.6 521 59.5
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 5.0e-163 578.6 403 74.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 9.4e-162 574.3 559 57.1
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.6e-161 572.4 535 59.4
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 2.0e-159 566.6 464 63.6
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 4.1e-157 558.9 535 58.7
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.0e-156 556.6 495 61.0
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 9.2e-149 531.2 477 60.0
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.2e-148 530.8 519 57.4
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 3.5e-148 529.3 477 60.0
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.6e-145 520.4 571 54.8
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 4.1e-141 505.8 410 66.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 7.8e-140 501.5 463 59.8
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.3e-136 490.0 348 72.4
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 3.9e-131 472.6 490 52.2
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.4e-128 464.2 344 69.5
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 4.4e-127 459.1 500 54.6
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.9e-126 455.7 354 68.4
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.6e-116 424.1 460 52.4
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.2e-108 397.9 391 55.8
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 9.3e-101 371.7 391 56.3
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-96 358.2 461 48.2
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 4.0e-88 329.7 479 45.1
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.4e-80 303.9 292 59.9
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-78 297.7 467 40.0
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-77 294.7 462 39.8
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.8e-75 287.7 471 39.5
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-75 287.3 469 39.2
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-74 284.3 465 40.2
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-73 281.6 460 39.3
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.6e-73 281.2 488 39.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.8e-73 279.6 498 38.0
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.4e-72 278.1 467 40.5
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.4e-72 277.3 458 38.2
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 4.5e-71 273.1 458 38.4
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 4.5e-71 273.1 497 38.0
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.2e-70 270.8 473 39.5
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.9e-70 270.4 431 40.6
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.1e-69 268.5 233 62.7
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.1e-69 268.5 450 39.6
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.2e-69 266.9 447 38.5
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 7.2e-69 265.8 450 38.7
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.2e-69 265.8 433 39.5
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 7.9e-68 262.3 369 43.9
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.4e-67 261.5 466 38.8
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 3.9e-67 260.0 449 39.0
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.4e-66 256.5 451 38.1
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 5.7e-66 256.1 452 39.6
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 9.7e-66 255.4 426 38.3
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 2.8e-65 253.8 426 38.3
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.8e-65 253.8 431 39.4
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.1e-64 251.9 445 37.5
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.4e-64 251.5 401 38.7
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-64 250.8 444 37.2
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 3.1e-64 250.4 444 36.5
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 4.1e-64 250.0 444 36.9
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 5.3e-64 249.6 494 36.2
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.9e-61 241.1 391 39.6
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 7.9e-60 235.7 418 38.5
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 3.0e-59 233.8 239 53.1
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 8.8e-59 232.3 427 38.2
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-58 231.9 445 34.4
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 1.1e-58 231.9 454 36.1
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.0e-58 231.1 391 40.2
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.3e-54 218.4 373 36.7
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 2.7e-52 210.7 471 35.2
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.6e-52 210.3 436 35.1
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 9.7e-50 202.2 162 66.7
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.0e-43 180.6 412 34.2
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 5.2e-43 179.9 155 56.8
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-42 178.7 274 39.1
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 4.8e-41 173.3 421 31.8
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.7e-39 166.0 389 33.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.0e-38 163.3 264 39.4
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.8e-36 157.5 280 37.9
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.0e-35 154.1 218 45.0
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 5.2e-35 153.3 190 51.1
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 4.4e-34 150.2 120 56.7
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.1e-32 145.6 256 35.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 7.0e-32 142.9 86 77.9
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.7e-30 138.3 145 52.4
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 7.3e-29 132.9 175 46.9
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-24 119.0 268 36.2
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.4e-24 118.6 205 37.6
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 7.0e-24 116.3 194 36.6
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 2.7e-23 114.4 190 36.3
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.0e-22 110.9 145 46.2
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.9e-22 110.5 109 56.0
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-20 104.8 230 33.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.0e-18 98.2 142 45.1
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 9.8e-18 95.9 60 75.0
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 4.9e-17 93.6 67 58.2
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.9e-16 91.7 61 70.5
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.4e-16 90.1 81 54.3
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.0e-16 89.7 119 41.2
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 7.0e-16 89.7 86 54.7
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 7.8e-15 86.3 340 26.5
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.0e-14 83.6 127 40.9
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.5e-13 81.3 138 36.2
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 2.5e-13 81.3 59 61.0
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 3.3e-13 80.9 120 39.2
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 9.5e-13 79.3 300 27.3
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 1.2e-12 79.0 56 69.6
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.7e-12 77.0 152 34.2
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.8e-11 75.1 123 35.0
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 4.0e-11 73.9 105 39.0
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 1.2e-10 72.4 182 25.3
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 1.5e-10 72.0 84 50.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 2.0e-10 71.6 172 33.1
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.0e-10 71.6 81 44.4
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.0e-10 71.6 73 53.4
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 4.4e-10 70.5 61 57.4
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.7e-09 68.6 41 80.5
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 1.7e-09 68.6 60 55.0
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.9e-09 67.0 82 45.1
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.9e-08 65.1 320 24.7
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 4.6e-07 60.5 146 31.5


User provided reference genes

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