Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2274.2 1211 100.0
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 2176.4 1238 94.8
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2172.9 1224 95.7
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2142.5 1224 93.5
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2105.1 1224 93.2
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 2037.7 1274 86.8
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1813.9 1229 79.3
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1787.7 1231 79.5
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1753.4 1221 78.0
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1604.3 1261 68.8
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1563.1 1238 68.3
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1560.4 1254 68.4
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1558.9 1230 68.5
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1557.0 1230 68.4
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1546.2 1299 66.7
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1541.6 1233 67.5
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1540.4 1236 67.6
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1538.1 1231 67.6
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1535.4 1244 66.9
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1530.8 1228 68.4
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1528.8 1254 66.5
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1524.6 1239 67.1
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1523.5 1233 66.4
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1523.5 1235 66.5
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1515.4 1289 65.9
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1514.2 1232 66.4
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1511.9 1233 67.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1503.4 1203 67.0
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1501.9 1232 65.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1499.2 1202 66.6
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1494.6 1228 65.7
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1493.8 1232 65.8
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1493.4 1236 66.7
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1490.7 1233 66.4
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1486.9 1243 65.9
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1486.9 1236 67.6
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1484.2 1212 66.4
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1482.6 1243 64.8
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1479.5 1238 65.8
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1478.0 1232 65.2
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1478.0 1237 65.3
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1474.5 1242 65.5
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1472.2 1237 64.7
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1471.8 1229 65.4
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1466.1 1241 64.5
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1459.1 1228 65.3
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1456.0 1252 64.5
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1454.1 1221 65.4
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1450.6 1238 63.5
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1448.7 1248 63.7
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1444.5 1246 64.3
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1442.9 1290 62.4
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1434.1 1235 62.8
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1430.6 1244 62.5
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1428.7 1242 61.7
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1411.4 1239 61.7
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1405.2 1229 61.4
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1399.8 1223 62.6
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1385.9 1228 62.8
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1382.9 1228 62.6
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1380.2 1237 61.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1377.8 1240 60.9
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1364.0 1252 60.7
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1359.7 1234 61.3
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1359.4 1258 59.7
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1358.2 1224 62.0
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1348.2 1237 59.2
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1343.6 1230 61.2
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1340.1 1263 58.7
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1339.3 1222 60.4
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1338.9 1240 59.5
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1335.5 1233 59.0
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1331.6 1204 61.1
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1327.8 1259 59.8
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1323.5 1251 59.7
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1320.1 1195 61.2
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1314.7 1255 58.8
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1304.3 1247 58.2
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1303.5 1196 59.4
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1302.7 1182 60.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1297.7 1232 59.3
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1297.0 1201 58.9
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1288.9 1267 56.9
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1283.9 1237 57.2
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1282.7 1262 56.8
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1275.8 1239 57.8
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1273.8 1197 59.0
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1273.8 1197 59.0
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1271.5 1206 58.5
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1261.1 1264 56.8
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1256.9 1082 62.1
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1255.7 1238 56.5
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1241.1 1258 56.0
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1219.5 1178 57.1
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1218.8 1230 56.9
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1169.1 1202 55.2
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1150.6 1217 54.2
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1125.2 1230 53.6
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1115.5 1236 53.2
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1109.4 1192 52.3
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1107.4 1281 49.9
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1093.6 950 63.7
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1079.7 1240 49.8
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 1.7e-311 1072.8 1082 55.9
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 1.1e-295 1020.4 1262 48.9
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 2.6e-295 1019.2 729 72.8
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 3.5e-284 982.2 1240 47.0
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.9e-274 949.9 1227 46.8
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 9.2e-261 904.4 640 73.9
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 7.0e-253 878.2 1223 46.4
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.3e-209 734.6 1112 42.2
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 7.4e-178 629.0 429 73.9
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 7.2e-165 585.9 544 62.1
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 3.5e-151 540.4 795 45.8
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.5e-146 525.0 456 63.6
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.3e-142 511.9 544 55.3
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.7e-142 511.5 610 48.0
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 7.5e-138 496.1 674 47.9
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.4e-136 491.9 1191 31.2
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.2e-135 488.8 1227 32.8
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.6e-135 486.9 1267 30.6
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.3e-134 485.3 1236 32.3
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 2.0e-122 444.9 1135 31.4
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.2e-116 425.6 1259 29.8
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 4.0e-91 340.9 1028 30.1
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 6.7e-86 323.6 1221 26.5
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.9e-81 308.1 1021 28.5
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.0e-78 298.1 247 63.6
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 2.8e-76 291.6 479 38.6
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.4e-75 289.3 479 38.6
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 2.0e-69 268.9 419 41.5
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.0e-46 193.4 217 51.6
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 6.3e-36 157.5 186 49.5
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 7.3e-32 144.1 1246 22.0
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.7e-31 141.4 347 31.4
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.2e-29 136.7 136 58.1
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.9e-28 132.1 92 70.7
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 6.4e-28 131.0 459 25.7
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.4e-27 129.8 129 53.5
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 9.2e-27 127.1 159 47.8
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.0e-17 97.1 122 45.1
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 3.0e-17 95.5 112 56.2
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 2.8e-15 89.0 73 56.2
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 2.3e-14 85.9 72 55.6
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 3.1e-14 85.5 69 63.8
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.2e-13 83.6 61 70.5
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.0e-13 82.8 190 33.7
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.8e-13 81.3 71 56.3
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 5.8e-13 81.3 53 73.6
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 5.8e-13 81.3 53 73.6
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 4.1e-11 75.1 95 37.9
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 3.6e-07 62.0 91 44.0
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 4.7e-07 61.6 44 63.6
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 8.1e-07 60.8 52 63.5
Glyma.11G134400 Glycine max HOM05D033723 ORTHO05D214704 1.4e-06 60.1 59 61.0
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 1.4e-06 60.1 76 46.1
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 4.0e-06 58.5 41 70.7


User provided reference genes

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