Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 0.0e+00 1343.2 717 100.0
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 0.0e+00 1295.8 715 97.2
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 0.0e+00 1274.6 715 96.4
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 0.0e+00 1274.2 715 96.2
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 0.0e+00 1218.8 753 88.8
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 9.8e-287 989.9 671 82.3
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.4e-224 783.5 741 64.4
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 3.4e-194 682.6 739 59.0
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 5.0e-174 615.5 539 68.5
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.6e-159 567.4 764 53.4
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 6.8e-155 552.0 767 50.6
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.5e-154 550.8 765 50.5
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 6.6e-142 508.8 754 49.6
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.3e-129 468.0 731 49.0
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 2.9e-129 466.8 742 45.1
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.5e-128 463.8 743 47.1
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.4e-123 448.0 769 44.1
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.3e-121 441.4 749 44.1
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 1.4e-120 438.0 686 48.3
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.7e-119 433.7 729 45.7
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 1.8e-115 421.0 698 48.7
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.2e-114 418.3 717 44.2
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.0e-113 415.2 708 44.5
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.2e-112 409.1 801 41.9
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 9.4e-112 408.7 720 46.8
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.2e-111 408.3 738 43.1
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 2.5e-109 400.6 712 43.3
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 2.2e-108 397.5 722 42.2
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.8e-108 396.4 766 40.9
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 5.3e-107 392.9 757 41.7
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.2e-106 391.7 710 42.8
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 4.5e-106 389.8 592 47.6
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 1.0e-105 388.7 718 42.3
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.4e-102 378.3 707 42.7
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.3e-102 377.5 742 41.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.1e-101 375.2 742 39.2
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.0e-101 374.4 832 39.2
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 4.4e-101 373.2 770 40.4
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 9.7e-101 372.1 702 43.4
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 4.8e-100 369.8 719 42.1
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.1e-99 368.6 526 49.2
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.4e-99 367.5 717 43.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.5e-98 364.8 708 41.8
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.9e-97 360.5 705 42.7
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 6.5e-97 359.4 705 41.7
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 6.5e-97 359.4 721 41.1
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 4.7e-95 353.2 739 41.0
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 2.3e-94 350.9 819 37.4
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.7e-92 344.7 724 39.1
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.1e-91 342.0 826 36.8
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.1e-91 340.5 616 45.3
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.6e-90 338.2 721 37.4
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 1.7e-89 334.7 569 45.0
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.9e-88 331.3 735 37.8
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 3.2e-88 330.5 709 38.5
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 9.4e-88 328.9 605 42.5
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 1.0e-86 325.5 834 36.6
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.0e-86 323.9 631 42.3
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 3.0e-86 323.9 734 39.8
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 3.0e-86 323.9 704 37.8
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 3.7e-84 317.0 696 39.8
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 9.1e-83 312.4 735 35.8
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 1.5e-80 305.1 727 36.3
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 6.1e-79 299.7 572 43.5
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 8.0e-79 299.3 795 35.5
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 6.8e-78 296.2 723 37.3
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.5e-77 295.0 725 36.0
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 4.4e-77 293.5 711 36.7
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 1.4e-75 288.5 754 36.1
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 3.1e-75 287.3 716 37.2
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.1e-75 287.0 639 38.2
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.6e-74 285.0 821 33.3
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 2.0e-74 284.6 729 37.4
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 4.5e-74 283.5 694 36.2
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 5.0e-73 280.0 619 38.9
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 4.2e-72 276.9 655 39.2
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 5.5e-72 276.6 718 38.0
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 5.5e-72 276.6 722 36.7
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 1.2e-71 275.4 707 38.2
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.6e-71 275.0 526 42.8
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 4.7e-71 273.5 715 35.8
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 2.3e-70 271.2 697 34.7
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 4.0e-70 270.4 695 36.1
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-68 265.4 733 35.9
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.2e-68 264.6 672 37.4
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 2.9e-68 264.2 533 42.2
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.8e-67 261.5 725 36.3
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 2.4e-67 261.2 732 36.1
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 2.4e-67 261.2 711 38.3
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 2.0e-66 258.1 746 35.5
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.7e-65 255.0 712 36.2
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 3.9e-65 253.8 706 36.3
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 8.6e-65 252.7 712 36.1
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 1.1e-64 252.3 703 34.7
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.5e-64 251.9 712 35.1
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 4.7e-63 246.9 754 34.1
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 4.7e-63 246.9 562 40.0
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.8e-62 245.0 500 39.8
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.8e-62 245.0 692 34.8
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 8.9e-62 242.7 732 34.7
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.2e-60 238.0 743 33.5
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.1e-59 235.7 700 33.9
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 9.2e-59 232.6 215 60.9
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.7e-58 231.1 237 56.1
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 5.6e-56 223.4 715 33.8
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.0e-53 214.9 322 45.3
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 2.9e-52 211.1 389 41.9
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.0e-49 202.6 404 43.3
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 4.3e-48 197.2 513 37.0
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 7.3e-48 196.4 696 32.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 2.9e-44 184.5 114 86.8
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 5.1e-41 173.7 761 29.0
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 5.6e-40 170.2 98 85.7
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 2.8e-39 167.9 168 60.1
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 2.8e-39 167.9 565 33.8
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 4.4e-37 160.6 691 29.2
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 8.7e-33 146.4 516 31.4
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 2.5e-32 144.8 668 29.0
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 9.0e-30 136.3 508 31.7
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 3.2e-27 127.9 161 51.6
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 3.5e-26 124.4 510 29.0
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.6e-26 124.0 389 36.0
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.9e-25 120.9 414 32.1
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.7e-20 105.5 62 79.0
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 3.2e-19 101.3 74 62.2
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 3.0e-17 94.7 164 43.9
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 3.2e-11 74.7 71 54.9
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.6e-10 70.9 99 50.5
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.9e-08 65.5 192 38.0
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 4.3e-08 64.3 64 53.1
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 5.7e-08 63.9 69 50.7
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 6.3e-07 60.5 46 58.7
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 5.3e-06 57.4 116 33.6
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 9.0e-06 56.6 46 69.6


User provided reference genes

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