Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.9e-136 487.3 239 100.0
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.0e-119 432.6 217 98.6
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.2e-118 429.1 236 92.4
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 2.1e-116 422.5 230 92.6
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.6e-116 421.4 230 92.6
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 2.0e-114 416.0 230 91.7
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.7e-113 412.9 272 79.4
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 7.7e-111 404.1 228 88.2
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.8e-105 385.6 228 85.1
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 8.2e-105 384.0 228 85.1
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 3.7e-97 358.6 217 82.5
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 4.5e-95 351.7 212 81.1
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 2.9e-94 349.0 227 77.5
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 5.0e-94 348.2 229 75.1
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.1e-92 342.8 227 76.7
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.0e-91 340.5 226 75.7
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 5.2e-91 338.2 230 74.8
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.5e-90 336.7 226 74.8
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.5e-90 336.7 226 74.3
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.5e-90 336.7 226 73.5
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.6e-90 335.9 226 74.3
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 5.7e-90 334.7 230 73.0
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 3.7e-89 332.0 233 72.5
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 4.8e-89 331.6 228 75.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 8.3e-89 330.9 234 73.5
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.1e-88 330.5 227 72.2
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.8e-88 329.7 230 72.2
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.8e-88 329.7 230 71.7
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 3.1e-88 328.9 227 71.8
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 3.1e-88 328.9 227 71.4
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 7.0e-88 327.8 218 75.7
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 9.1e-88 327.4 217 75.1
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.2e-87 327.0 230 72.2
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.2e-87 327.0 217 74.7
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.6e-87 326.6 230 71.3
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 4.5e-87 325.1 230 68.7
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.5e-87 325.1 215 74.0
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 5.9e-87 324.7 217 74.7
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 7.7e-87 324.3 227 69.2
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.0e-86 323.9 226 69.9
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.7e-86 323.2 226 69.0
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.7e-86 323.2 215 74.4
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.7e-86 323.2 226 69.0
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.7e-86 323.2 226 69.5
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 2.3e-86 322.8 226 70.8
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 2.9e-86 322.4 226 69.0
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.9e-86 322.4 222 77.0
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.9e-86 322.4 226 69.9
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 3.8e-86 322.0 226 69.9
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 5.0e-86 321.6 229 68.1
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 6.5e-86 321.2 226 69.9
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 8.6e-86 320.9 226 69.5
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-85 320.5 226 68.6
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-85 320.5 215 70.7
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.1e-85 320.5 226 72.1
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.1e-85 320.5 226 71.7
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.1e-85 320.5 227 68.7
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.5e-85 320.1 226 72.1
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.5e-85 319.3 230 71.3
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 5.5e-85 318.2 226 67.3
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 5.5e-85 318.2 215 70.2
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 7.2e-85 317.8 221 69.2
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 7.2e-85 317.8 227 68.3
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.6e-84 316.6 214 70.6
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 2.1e-84 316.2 230 70.4
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 2.1e-84 316.2 217 73.7
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 2.8e-84 315.8 223 70.4
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.8e-84 315.8 230 70.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 3.6e-84 315.5 236 67.4
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 4.7e-84 315.1 226 68.6
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 4.7e-84 315.1 222 71.2
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 6.1e-84 314.7 227 70.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.8e-83 313.2 227 69.6
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-83 313.2 223 67.3
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.8e-83 313.2 223 67.3
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.3e-83 312.8 223 67.3
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 3.0e-83 312.4 230 69.1
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 3.0e-83 312.4 230 68.7
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.2e-83 311.6 213 72.3
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 2.6e-82 309.3 226 68.1
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 2.6e-82 309.3 217 69.1
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.6e-82 309.3 213 72.3
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 3.4e-82 308.9 223 67.7
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 3.4e-82 308.9 226 67.7
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.4e-82 308.5 223 67.7
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 4.4e-82 308.5 219 71.7
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 7.5e-82 307.8 226 68.6
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 7.5e-82 307.8 226 68.6
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 7.5e-82 307.8 226 68.1
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.2e-81 306.2 230 67.0
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.2e-81 306.2 213 71.8
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 2.8e-81 305.8 226 66.8
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 4.9e-81 305.1 230 67.4
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 4.9e-81 305.1 226 67.3
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 4.9e-81 305.1 226 67.3
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 6.3e-81 304.7 223 67.3
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 1.1e-80 303.9 240 65.0
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.4e-80 303.5 217 70.5
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.4e-80 303.5 217 70.5
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.1e-80 302.4 226 68.1
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.1e-80 302.4 206 70.4
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 9.2e-80 300.8 212 70.3
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 7.8e-79 297.7 229 65.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.0e-78 297.4 223 67.3
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.3e-78 297.0 227 66.1
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.7e-78 296.6 226 65.5
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-78 296.6 204 68.6
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.7e-78 296.6 226 66.4
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.9e-78 295.8 202 69.8
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 8.6e-78 294.3 201 69.2
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 3.3e-77 292.4 235 65.5
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 4.3e-77 292.0 206 70.4
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.6e-76 290.0 208 67.3
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.6e-76 290.0 226 64.2
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 3.6e-76 288.9 217 67.3
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 6.1e-76 288.1 207 67.1
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 6.1e-76 288.1 203 68.5
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 6.1e-76 288.1 207 67.1
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 8.0e-76 287.7 204 68.6
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.4e-75 287.0 227 64.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.8e-75 286.6 221 62.9
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 4.4e-74 282.0 211 69.2
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 9.8e-74 280.8 229 63.8
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 3.7e-73 278.9 210 67.6
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.6e-71 271.9 202 65.3
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 6.0e-71 271.6 211 64.5
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 7.8e-71 271.2 213 64.3
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.2e-68 263.8 195 67.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 3.6e-68 262.3 216 61.6
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 4.7e-68 261.9 186 71.0
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 6.2e-68 261.5 198 65.2
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.3e-67 259.6 212 61.8
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 3.4e-66 255.8 220 60.0
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 9.8e-66 254.2 182 68.1
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 2.9e-65 252.7 202 60.4
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 4.9e-65 251.9 212 60.4
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.1e-64 250.8 216 62.5
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.0e-62 244.2 226 60.6
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 3.9e-62 242.3 177 68.4
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 8.6e-62 241.1 225 58.2
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 4.9e-57 225.3 214 57.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 1.4e-56 223.8 207 55.6
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 9.2e-56 221.1 230 52.2
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 2.7e-55 219.5 158 67.7
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 3.0e-54 216.1 158 67.1
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 2.5e-53 213.0 211 52.6
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.3e-53 212.2 233 54.5
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 2.1e-52 209.9 212 54.7
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.6e-52 209.1 146 69.9
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 4.7e-52 208.8 222 51.4
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 6.8e-51 204.9 128 76.6
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.6e-50 203.0 222 49.5
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 5.8e-50 201.8 212 52.8
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.3e-45 186.0 185 54.6
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 2.1e-44 183.3 211 46.0
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.2e-44 181.8 152 64.5
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.4e-40 170.6 237 43.9
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 8.7e-38 161.4 103 69.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.5e-37 159.8 240 42.1
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 7.3e-37 158.3 113 67.3
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.5e-34 150.6 238 41.2
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 2.7e-31 139.8 119 64.7
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 2.7e-31 139.8 180 47.8
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 6.0e-31 138.7 155 45.2
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 4.0e-27 125.9 79 74.7
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 6.9e-27 125.2 94 68.1
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.1e-24 117.9 83 72.3
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 7.1e-24 115.2 117 59.0
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 5.1e-22 109.0 63 81.0
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.8e-20 103.2 157 36.3
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.3e-14 83.6 69 60.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 9.0e-11 71.6 202 26.7
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.5e-10 69.3 108 38.9
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.6e-07 60.8 72 51.4
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 1.6e-07 60.8 40 62.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 5.1e-06 55.8 78 39.7


User provided reference genes

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