Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 2.1e-117 425.6 203 100.0
FvH4_2g40220 Fragaria vesca HOM05D012912 ORTHO05D017004 1.4e-89 333.2 222 75.7
FvH4_2g40210 Fragaria vesca HOM05D012912 ORTHO05D017004 1.6e-69 266.5 126 93.7
FAN15G1643 Fragaria x ananassa HOM05D012912 ORTHO05D017004 5.8e-67 258.1 139 85.6
FAN20G1071 Fragaria x ananassa HOM05D012912 ORTHO05D017004 9.6e-62 240.7 147 76.2
FvH4_2g40191 Fragaria vesca HOM05D012912 ORTHO05D017004 9.9e-59 230.7 141 75.9
FvH4_2g40203 Fragaria vesca HOM05D012912 ORTHO05D017004 2.3e-55 219.5 134 76.9
FAN11G3187 Fragaria x ananassa HOM05D012912 ORTHO05D017004 1.4e-28 130.6 152 51.3
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 1.3e-18 97.4 54 94.4
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 8.5e-18 94.7 53 94.3
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 1.1e-12 77.8 42 97.6
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 1.4e-12 77.4 42 92.9
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 1.8e-12 77.0 42 95.2
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 3.1e-12 76.3 42 95.2
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.1e-12 76.3 42 95.2
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 3.1e-12 76.3 42 95.2
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 4.1e-12 75.9 42 92.9
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 4.1e-12 75.9 42 92.9
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 5.3e-12 75.5 42 92.9
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 5.3e-12 75.5 42 95.2
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 6.9e-12 75.1 42 90.5
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 6.9e-12 75.1 42 92.9
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 9.1e-12 74.7 42 90.5
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 9.1e-12 74.7 42 88.1
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 9.1e-12 74.7 42 92.9
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 9.1e-12 74.7 42 90.5
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 9.1e-12 74.7 42 90.5
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.2e-11 74.3 41 92.7
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.2e-11 74.3 41 92.7
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 1.2e-11 74.3 42 95.2
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 1.2e-11 74.3 42 90.5
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 1.2e-11 74.3 42 90.5
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.2e-11 74.3 42 90.5
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.2e-11 74.3 42 90.5
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 1.5e-11 73.9 42 90.5
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 2.0e-11 73.6 42 90.5
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 2.0e-11 73.6 42 88.1
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.6e-11 73.2 42 88.1
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 2.6e-11 73.2 42 88.1
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.6e-11 73.2 42 88.1
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 2.6e-11 73.2 42 90.5
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 3.4e-11 72.8 41 90.2
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 3.4e-11 72.8 42 88.1
FvH4_3g18081 Fragaria vesca HOM05D012912 ORTHO05D046276 3.4e-11 72.8 112 37.5
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.4e-11 72.8 42 90.5
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.4e-11 72.8 42 90.5
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 3.4e-11 72.8 42 88.1
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 4.5e-11 72.4 42 88.1
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 4.5e-11 72.4 41 90.2
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 4.5e-11 72.4 41 92.7
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 4.5e-11 72.4 42 88.1
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 5.9e-11 72.0 42 88.1
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.9e-11 72.0 42 90.5
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 5.9e-11 72.0 42 90.5
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 5.9e-11 72.0 50 76.0
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 7.7e-11 71.6 38 97.4
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 7.7e-11 71.6 42 88.1
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 7.7e-11 71.6 42 85.7
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 7.7e-11 71.6 42 85.7
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 1.0e-10 71.2 42 83.3
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.0e-10 71.2 42 85.7
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.3e-10 70.9 39 92.3
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 1.3e-10 70.9 42 88.1
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.3e-10 70.9 42 85.7
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 1.7e-10 70.5 123 39.8
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.7e-10 70.5 42 88.1
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 1.7e-10 70.5 42 88.1
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 1.7e-10 70.5 42 88.1
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.7e-10 70.5 42 85.7
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.2e-10 70.1 42 88.1
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 2.2e-10 70.1 42 83.3
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 2.2e-10 70.1 41 85.4
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 2.9e-10 69.7 42 88.1
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 2.9e-10 69.7 41 85.4
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 3.8e-10 69.3 40 90.0
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 6.5e-10 68.6 42 81.0
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 6.5e-10 68.6 42 85.7
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 6.5e-10 68.6 39 87.2
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 6.5e-10 68.6 40 85.0
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 6.5e-10 68.6 42 85.7
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 6.5e-10 68.6 42 85.7
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 6.5e-10 68.6 42 85.7
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 8.5e-10 68.2 39 87.2
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 8.5e-10 68.2 40 85.0
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 1.1e-09 67.8 38 89.5
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 1.4e-09 67.4 38 86.8
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 2.5e-09 66.6 36 91.7
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 2.5e-09 66.6 40 87.5
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 3.2e-09 66.2 42 78.6
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 4.2e-09 65.9 40 85.0
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 4.2e-09 65.9 42 81.0
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 4.2e-09 65.9 42 81.0
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 4.2e-09 65.9 38 92.1
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 5.5e-09 65.5 40 82.5
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 5.5e-09 65.5 42 76.2
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 7.2e-09 65.1 42 83.3
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 7.2e-09 65.1 41 85.4
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 9.4e-09 64.7 38 86.8
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 1.2e-08 64.3 42 76.2
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 1.2e-08 64.3 38 84.2
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.2e-08 64.3 41 80.5
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 1.6e-08 63.9 42 78.6
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 1.6e-08 63.9 40 80.0
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 1.6e-08 63.9 40 80.0
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 1.6e-08 63.9 40 80.0
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 1.6e-08 63.9 40 80.0
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 1.6e-08 63.9 40 80.0
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 1.6e-08 63.9 40 80.0
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 1.6e-08 63.9 42 81.0
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.6e-08 63.9 40 80.0
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 2.1e-08 63.5 42 78.6
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 2.7e-08 63.2 42 81.0
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 3.6e-08 62.8 35 91.4
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 4.7e-08 62.4 40 77.5
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 4.7e-08 62.4 40 77.5
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 6.1e-08 62.0 42 78.6
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 7.9e-08 61.6 40 77.5
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 7.9e-08 61.6 66 59.1
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 1.0e-07 61.2 38 78.9
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 1.0e-07 61.2 76 51.3
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 1.4e-07 60.8 42 78.6
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 1.4e-07 60.8 42 78.6
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 1.4e-07 60.8 42 78.6
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 1.4e-07 60.8 42 78.6
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 1.4e-07 60.8 39 76.9
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 1.4e-07 60.8 42 76.2
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 1.4e-07 60.8 40 77.5
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 1.4e-07 60.8 41 75.6
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 2.3e-07 60.1 40 80.0
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 2.3e-07 60.1 41 78.0
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 2.3e-07 60.1 41 78.0
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 2.3e-07 60.1 41 78.0
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 2.3e-07 60.1 37 81.1
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 3.0e-07 59.7 40 75.0
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 3.9e-07 59.3 38 76.3
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 3.9e-07 59.3 43 72.1
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 3.9e-07 59.3 36 83.3
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 5.1e-07 58.9 42 71.4
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 6.7e-07 58.5 40 75.0
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 8.8e-07 58.2 38 81.6
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 8.8e-07 58.2 38 81.6
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 8.8e-07 58.2 38 81.6
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 8.8e-07 58.2 38 81.6
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 1.5e-06 57.4 39 82.1
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 1.5e-06 57.4 38 78.9
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 1.5e-06 57.4 38 78.9
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 2.0e-06 57.0 34 82.4
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 2.6e-06 56.6 38 78.9
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 2.6e-06 56.6 40 72.5
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 2.6e-06 56.6 38 78.9
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 7.4e-06 55.1 47 63.8
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 7.4e-06 55.1 35 77.1
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 9.7e-06 54.7 35 74.3


User provided reference genes

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