Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.4e-35 152.5 85 100.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.3e-32 141.4 79 98.7
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.6e-32 139.8 79 97.5
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.8e-31 138.3 79 97.5
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 2.8e-31 138.3 79 94.9
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 4.2e-27 124.4 79 86.1
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 5.5e-27 124.0 82 87.8
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 6.0e-26 120.6 74 85.1
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 3.0e-25 118.2 74 85.1
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 8.7e-25 116.7 74 83.8
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 5.6e-24 114.0 75 81.3
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.6e-24 114.0 71 83.1
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 7.4e-24 113.6 70 85.7
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 9.6e-24 113.2 79 77.2
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 9.6e-24 113.2 73 82.2
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.3e-23 112.8 71 84.5
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.3e-23 112.8 71 84.5
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.3e-23 112.8 74 78.4
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.3e-23 112.8 70 84.3
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.6e-23 112.5 71 83.1
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.6e-23 112.5 70 82.9
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.6e-23 112.5 71 81.7
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.1e-23 112.1 76 77.6
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 2.1e-23 112.1 72 80.6
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.1e-23 112.1 71 83.1
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 2.1e-23 112.1 73 80.8
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 2.1e-23 112.1 73 80.8
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.1e-23 112.1 73 80.8
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 2.8e-23 111.7 72 81.9
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.8e-23 111.7 70 84.3
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 3.7e-23 111.3 71 81.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 3.7e-23 111.3 71 81.7
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 4.8e-23 110.9 71 80.3
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 4.8e-23 110.9 72 80.6
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 4.8e-23 110.9 72 79.2
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 4.8e-23 110.9 71 83.1
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 6.2e-23 110.5 72 79.2
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 6.2e-23 110.5 70 82.9
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 6.2e-23 110.5 70 82.9
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 6.2e-23 110.5 70 85.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 8.2e-23 110.2 70 82.9
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 8.2e-23 110.2 71 81.7
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 8.2e-23 110.2 73 79.5
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.1e-22 109.8 71 81.7
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.1e-22 109.8 70 84.3
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 1.1e-22 109.8 71 81.7
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.1e-22 109.8 70 80.0
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.1e-22 109.8 71 80.3
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.4e-22 109.4 71 81.7
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.4e-22 109.4 73 79.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.4e-22 109.4 70 81.4
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.8e-22 109.0 70 80.0
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 1.8e-22 109.0 78 75.6
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.8e-22 109.0 79 72.2
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 1.8e-22 109.0 79 72.2
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.8e-22 109.0 79 72.2
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.8e-22 109.0 70 81.4
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.4e-22 108.6 72 79.2
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 2.4e-22 108.6 70 81.4
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 2.4e-22 108.6 70 84.3
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.1e-22 108.2 70 84.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.1e-22 108.2 70 84.3
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.1e-22 108.2 72 77.8
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.1e-22 108.2 70 84.3
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 3.1e-22 108.2 79 73.4
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 3.1e-22 108.2 71 80.3
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 4.0e-22 107.8 67 83.6
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 4.0e-22 107.8 70 78.6
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.0e-22 107.8 72 79.2
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 4.0e-22 107.8 70 77.1
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 4.0e-22 107.8 70 78.6
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 4.0e-22 107.8 72 77.8
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 5.3e-22 107.5 71 81.7
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 5.3e-22 107.5 70 81.4
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 5.3e-22 107.5 70 80.0
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.3e-22 107.5 70 80.0
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 5.3e-22 107.5 74 75.7
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 6.9e-22 107.1 70 81.4
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 6.9e-22 107.1 70 81.4
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 6.9e-22 107.1 70 81.4
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.9e-22 107.1 72 77.8
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.9e-22 107.1 72 77.8
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.9e-22 107.1 72 77.8
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 6.9e-22 107.1 72 77.8
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 6.9e-22 107.1 70 80.0
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 9.0e-22 106.7 70 82.9
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 9.0e-22 106.7 74 74.3
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-21 106.3 70 82.9
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-21 106.3 70 82.9
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.2e-21 106.3 70 81.4
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.5e-21 105.9 71 81.7
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.5e-21 105.9 70 81.4
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.5e-21 105.9 70 81.4
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.5e-21 105.9 70 82.9
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.5e-21 105.9 70 81.4
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.5e-21 105.9 71 80.3
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 2.0e-21 105.5 70 81.4
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 2.0e-21 105.5 73 79.5
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 2.6e-21 105.1 70 80.0
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 2.6e-21 105.1 70 81.4
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 2.6e-21 105.1 70 80.0
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 2.6e-21 105.1 70 80.0
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 2.6e-21 105.1 70 80.0
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 2.6e-21 105.1 70 81.4
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 2.6e-21 105.1 71 76.1
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.6e-21 105.1 70 78.6
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 3.4e-21 104.8 73 78.1
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 3.4e-21 104.8 70 78.6
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 3.4e-21 104.8 70 78.6
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 3.4e-21 104.8 70 78.6
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 3.4e-21 104.8 75 76.0
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.5e-21 104.4 70 75.7
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 4.5e-21 104.4 73 75.3
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 5.8e-21 104.0 70 78.6
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 5.8e-21 104.0 71 77.5
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 5.8e-21 104.0 70 80.0
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 7.6e-21 103.6 72 75.0
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.0e-20 103.2 70 77.1
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.3e-20 102.8 70 78.6
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.3e-20 102.8 73 74.0
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.3e-20 102.8 73 74.0
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.7e-20 102.4 70 77.1
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 1.7e-20 102.4 68 79.4
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 2.2e-20 102.1 71 76.1
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.2e-20 102.1 72 70.8
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 2.9e-20 101.7 71 73.2
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.9e-20 101.7 72 76.4
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.9e-20 101.7 73 74.0
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.8e-20 101.3 72 73.6
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 4.9e-20 100.9 72 76.4
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 8.4e-20 100.1 70 75.7
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 8.4e-20 100.1 70 75.7
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 8.4e-20 100.1 72 69.4
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 1.1e-19 99.8 68 76.5
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.1e-19 99.8 70 75.7
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.4e-19 99.4 70 75.7
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.9e-19 99.0 70 74.3
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 2.5e-19 98.6 70 75.7
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 3.2e-19 98.2 67 76.1
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 4.2e-19 97.8 66 75.8
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 5.5e-19 97.4 82 67.1
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 6.0e-18 94.0 77 63.6
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.9e-17 91.3 108 52.8
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 3.9e-17 91.3 70 64.3
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 5.1e-17 90.9 72 65.3
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 8.7e-17 90.1 73 64.4
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 7.4e-16 87.0 67 76.1
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 2.2e-15 85.5 50 94.0
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 6.5e-12 73.9 46 78.3
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.9e-11 72.4 45 77.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.0e-09 66.6 66 62.1
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 9.7e-08 60.1 48 66.7
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 2.2e-07 58.9 49 53.1
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 2.8e-07 58.5 62 58.1
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 2.8e-07 58.5 62 58.1
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 4.8e-07 57.8 38 78.9
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 1.8e-06 55.8 47 66.0
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.8e-06 55.8 29 89.7
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.8e-06 55.8 31 80.6
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 3.1e-06 55.1 38 71.1
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 5.3e-06 54.3 41 70.7
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 5.3e-06 54.3 41 70.7
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 6.9e-06 53.9 45 68.9


User provided reference genes

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