Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 6.5e-151 537.3 266 100.0
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 4.7e-133 478.0 266 92.1
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 3.2e-126 455.3 266 85.7
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 8.8e-116 420.6 233 91.8
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.4e-105 384.8 213 92.0
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 2.2e-98 362.8 261 71.6
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 8.0e-93 344.4 261 66.3
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.9e-86 323.2 266 62.8
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 1.4e-84 317.0 266 61.7
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 3.7e-82 308.9 246 62.6
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 1.7e-79 300.1 266 60.5
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.3e-79 299.7 239 64.9
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 6.6e-79 298.1 248 62.1
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 9.5e-78 294.3 266 61.7
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 8.1e-77 291.2 268 57.5
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 3.1e-76 289.3 265 56.2
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 4.0e-76 288.9 266 56.4
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 8.9e-76 287.7 268 57.5
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.3e-74 283.9 268 55.2
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 6.4e-74 281.6 205 64.9
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 8.4e-74 281.2 263 55.1
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 3.2e-73 279.3 268 56.0
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 9.2e-73 277.7 240 58.8
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.2e-72 277.3 184 70.1
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.3e-71 273.9 236 62.3
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 5.1e-71 271.9 245 56.3
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.5e-70 270.4 255 56.9
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.5e-70 270.4 222 61.3
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.9e-70 270.0 239 56.5
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.5e-70 269.6 245 56.3
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 3.3e-70 269.2 219 63.9
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 1.2e-69 267.3 240 59.2
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.1e-69 266.5 245 55.5
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 2.8e-69 266.2 242 55.8
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 1.4e-68 263.8 220 58.6
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.4e-68 263.8 214 57.9
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 4.4e-67 258.8 202 60.4
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 5.8e-67 258.5 245 56.3
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 5.8e-67 258.5 247 55.1
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.7e-66 256.9 193 62.2
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 2.2e-66 256.5 239 54.8
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 1.4e-65 253.8 180 61.7
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 4.2e-65 252.3 178 63.5
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 7.1e-65 251.5 232 58.2
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 7.1e-65 251.5 181 62.4
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.6e-64 250.4 246 54.5
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 2.7e-64 249.6 179 67.6
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 1.0e-63 247.7 204 56.9
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 1.0e-63 247.7 208 57.2
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 1.7e-63 246.9 191 62.3
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.9e-63 245.7 184 62.0
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 3.9e-63 245.7 199 59.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 3.9e-63 245.7 199 59.3
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 1.9e-62 243.4 238 50.4
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.9e-62 243.4 188 56.9
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 2.5e-62 243.0 174 65.5
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 2.5e-62 243.0 199 59.3
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 7.3e-62 241.5 195 60.0
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 9.6e-62 241.1 184 60.3
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 9.6e-62 241.1 196 57.1
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.6e-61 240.4 184 59.8
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 8.1e-61 238.0 205 54.1
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 8.1e-61 238.0 198 57.6
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.1e-60 237.7 174 62.6
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 6.9e-60 235.0 170 62.9
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.6e-59 233.0 170 61.8
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 2.6e-59 233.0 207 52.7
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 9.9e-59 231.1 212 50.5
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.1e-57 227.6 189 56.1
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.9e-57 226.9 169 60.4
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 3.2e-57 226.1 181 56.9
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 5.4e-57 225.3 175 61.1
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 7.1e-57 224.9 188 55.3
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.2e-56 224.2 200 52.5
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.2e-56 224.2 200 52.5
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 7.9e-56 221.5 213 48.8
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 1.8e-55 220.3 197 53.3
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 1.8e-55 220.3 197 53.3
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 2.3e-55 219.9 181 54.1
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 3.0e-55 219.5 198 51.5
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 3.9e-55 219.2 185 53.5
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 6.7e-55 218.4 181 53.6
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 8.7e-55 218.0 185 54.1
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.1e-54 217.6 185 53.0
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.1e-54 217.6 122 88.5
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.9e-54 216.9 197 52.8
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 9.6e-54 214.5 182 52.7
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 2.1e-53 213.4 197 51.8
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 3.7e-53 212.6 223 45.7
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 6.2e-53 211.8 174 54.6
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 3.1e-52 209.5 173 59.5
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 7.9e-48 194.9 180 55.6
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 5.1e-47 192.2 177 54.8
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 3.2e-41 172.9 139 60.4
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 2.7e-40 169.9 120 70.8
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 1.3e-39 167.5 139 61.9
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 8.7e-39 164.9 129 62.0
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 5.7e-38 162.2 199 37.7
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 8.2e-37 158.3 122 60.7
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 1.3e-26 124.4 149 38.3
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.7e-26 124.0 245 31.0
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 5.5e-25 119.0 151 43.7
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.5e-19 100.9 197 29.9
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 2.0e-19 100.5 168 29.8
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.7e-18 97.4 73 52.1
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.9e-17 94.0 73 52.1
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 3.2e-17 93.2 162 30.9
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.2e-16 91.3 73 60.3
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 3.6e-16 89.7 119 47.9
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 1.0e-15 88.2 174 27.0
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.4e-15 87.8 81 54.3
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 1.4e-15 87.8 165 29.7
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 2.3e-15 87.0 84 53.6
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 2.3e-15 87.0 167 32.3
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 6.7e-15 85.5 186 29.0
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 8.8e-15 85.1 161 30.4
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 2.6e-14 83.6 170 27.1
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 5.7e-14 82.4 187 25.7
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 7.4e-14 82.0 158 29.1
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 9.7e-14 81.6 204 26.0
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 3.7e-13 79.7 189 27.5
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 3.7e-13 79.7 203 24.6
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 4.8e-13 79.3 171 28.7
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 8.2e-13 78.6 171 28.1
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.4e-12 77.8 169 28.4
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 1.4e-12 77.8 187 25.1
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 5.3e-12 75.9 155 27.7
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 7.0e-12 75.5 66 51.5
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.6e-11 74.3 134 30.6
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.6e-11 74.3 160 26.2
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 2.0e-11 73.9 163 25.2
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 2.6e-11 73.6 141 28.4
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 3.5e-11 73.2 164 25.6
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 4.5e-11 72.8 161 26.1
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 7.7e-11 72.0 171 28.1
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 1.0e-10 71.6 169 27.2
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 1.3e-10 71.2 165 23.6
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 1.3e-10 71.2 164 23.8
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 1.3e-10 71.2 204 27.0
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 1.7e-10 70.9 161 27.3
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 2.2e-10 70.5 183 23.0
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 6.5e-10 68.9 62 56.5
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 8.5e-10 68.6 141 27.7
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 2.5e-09 67.0 134 29.1
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 3.2e-09 66.6 181 22.1
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 4.2e-09 66.2 151 27.2
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 4.2e-09 66.2 183 25.7
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 7.2e-09 65.5 204 26.0
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 7.2e-09 65.5 134 26.1
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 1.6e-08 64.3 146 26.0
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 2.1e-08 63.9 36 66.7
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 3.6e-08 63.2 167 24.0
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 3.6e-08 63.2 172 25.0
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 3.6e-08 63.2 171 23.4
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 4.7e-08 62.8 134 27.6
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 6.1e-08 62.4 136 27.9
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 3.0e-07 60.1 144 26.4
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 5.2e-07 59.3 171 25.7
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 1.5e-06 57.8 173 23.1
Actinidia17847 Actinidia chinensis HOM05D000827 ORTHO05D008888 2.6e-06 57.0 102 40.2


User provided reference genes

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