Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2142 Fragaria x ananassa HOM05D003313 ORTHO05D015668 6.7e-75 283.9 139 100.0
FAN07G0876 Fragaria x ananassa HOM05D003313 ORTHO05D015668 4.7e-44 181.4 102 88.2
FAN10G1842 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.3e-43 179.1 119 76.5
FAN15G1318 Fragaria x ananassa HOM05D003313 ORTHO05D015668 4.0e-43 178.3 98 90.8
FAN21G1344 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.2e-41 172.6 94 90.4
FAN02G4136 Fragaria x ananassa HOM05D003313 ORTHO05D015668 3.5e-39 165.2 99 85.9
FvH4_1g29860 Fragaria vesca HOM05D003313 ORTHO05D015668 2.0e-26 122.9 72 87.5
FAN19G3111 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.1e-24 117.1 78 76.9
FAN05G0528 Fragaria x ananassa HOM05D003313 ORTHO05D015668 4.0e-19 98.6 66 75.8
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 3.3e-13 79.0 58 70.7
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.3e-13 79.0 58 70.7
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.3e-13 79.0 58 70.7
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.3e-13 79.0 58 70.7
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.3e-13 79.0 58 70.7
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 3.3e-13 79.0 58 70.7
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 2.1e-12 76.3 58 67.2
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 3.6e-12 75.5 58 65.5
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 3.6e-12 75.5 58 65.5
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 4.8e-12 75.1 58 63.8
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 4.8e-12 75.1 58 63.8
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 4.8e-12 75.1 58 63.8
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 4.8e-12 75.1 58 63.8
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 8.1e-12 74.3 58 63.8
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 8.1e-12 74.3 58 63.8
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 1.1e-11 73.9 58 62.1
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.1e-11 73.9 58 63.8
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.1e-11 73.9 54 66.7
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.1e-11 73.9 54 66.7
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 1.1e-11 73.9 58 62.1
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 1.4e-11 73.6 58 62.1
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.4e-11 73.6 58 63.8
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.4e-11 73.6 58 63.8
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 1.4e-11 73.6 58 62.1
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 1.4e-11 73.6 58 62.1
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 1.4e-11 73.6 58 63.8
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 1.4e-11 73.6 58 63.8
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 1.8e-11 73.2 58 62.1
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 1.8e-11 73.2 54 64.8
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 3.1e-11 72.4 58 63.8
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 3.1e-11 72.4 58 63.8
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 3.1e-11 72.4 58 63.8
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 3.1e-11 72.4 58 63.8
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 3.1e-11 72.4 58 63.8
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 3.1e-11 72.4 58 63.8
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 3.1e-11 72.4 58 63.8
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.0e-11 72.0 53 66.0
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.0e-11 72.0 53 66.0
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 4.0e-11 72.0 53 66.0
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 4.0e-11 72.0 54 64.8
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 5.3e-11 71.6 58 62.1
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.3e-11 71.6 58 62.1
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.3e-11 71.6 58 62.1
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 5.3e-11 71.6 58 60.3
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 5.3e-11 71.6 58 62.1
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 5.3e-11 71.6 58 60.3
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 5.3e-11 71.6 58 62.1
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 5.3e-11 71.6 58 62.1
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 63.8
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 6.9e-11 71.2 58 62.1
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 6.9e-11 71.2 52 67.3
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 9.0e-11 70.9 52 65.4
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 9.0e-11 70.9 58 60.3
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 9.0e-11 70.9 58 60.3
FAN15G0416 Fragaria x ananassa HOM05D020189 ORTHO05D015668 9.0e-11 70.9 43 81.4
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.2e-10 70.5 53 66.0
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 1.2e-10 70.5 52 65.4
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.2e-10 70.5 53 64.2
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.2e-10 70.5 53 64.2
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 1.2e-10 70.5 58 58.6
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 1.5e-10 70.1 58 60.3
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.5e-10 70.1 58 60.3
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.5e-10 70.1 58 60.3
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.5e-10 70.1 53 66.0
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.5e-10 70.1 53 66.0
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.5e-10 70.1 53 66.0
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.5e-10 70.1 58 62.1
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.5e-10 70.1 58 62.1
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.5e-10 70.1 58 60.3
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.5e-10 70.1 58 58.6
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.5e-10 70.1 58 58.6
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 1.5e-10 70.1 52 65.4
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 1.5e-10 70.1 54 63.0
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 2.0e-10 69.7 58 58.6
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 2.6e-10 69.3 58 60.3
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 2.6e-10 69.3 54 63.0
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 2.6e-10 69.3 54 63.0
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 2.6e-10 69.3 54 61.1
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 2.6e-10 69.3 57 59.6
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 2.6e-10 69.3 57 59.6
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 3.4e-10 68.9 58 56.9
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 3.4e-10 68.9 52 65.4
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 3.4e-10 68.9 58 60.3
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 3.4e-10 68.9 52 65.4
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 4.4e-10 68.6 53 62.3
FAN27G1681 Fragaria x ananassa HOM05D003313 ORTHO05D015668 4.4e-10 68.6 37 86.5
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 5.8e-10 68.2 52 63.5
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 5.8e-10 68.2 52 63.5
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 5.8e-10 68.2 52 63.5
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 5.8e-10 68.2 52 63.5
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 5.8e-10 68.2 52 63.5
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 5.8e-10 68.2 58 58.6
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 5.8e-10 68.2 50 68.0
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 5.8e-10 68.2 58 60.3
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 7.6e-10 67.8 52 63.5
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 7.6e-10 67.8 52 63.5
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 9.9e-10 67.4 58 56.9
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 9.9e-10 67.4 54 59.3
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 9.9e-10 67.4 53 60.4
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 9.9e-10 67.4 53 60.4
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 1.3e-09 67.0 54 61.1
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 1.3e-09 67.0 54 61.1
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 1.3e-09 67.0 54 59.3
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.3e-09 67.0 58 60.3
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 1.3e-09 67.0 54 59.3
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 1.3e-09 67.0 54 59.3
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 1.3e-09 67.0 54 59.3
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 2.2e-09 66.2 54 57.4
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 2.2e-09 66.2 52 63.5
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 4.9e-09 65.1 54 57.4
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 8.4e-09 64.3 52 57.7
ATR0620G069 Amborella trichopoda HOM05D003313 ORTHO05D004217 4.2e-08 62.0 44 65.9
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 4.2e-08 62.0 52 59.6
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 9.3e-08 60.8 52 57.7
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 2.7e-07 59.3 51 58.8
FAN04G0942 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.3e-06 57.0 32 81.2
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 1.7e-06 56.6 62 48.4


User provided reference genes

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