Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.7e-277 957.2 476 100.0
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.8e-271 937.6 476 97.9
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 3.3e-270 934.5 476 97.5
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.2e-270 934.1 476 98.1
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.0e-268 929.5 476 97.5
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 9.5e-246 853.2 485 89.5
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.7e-173 613.2 475 69.1
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 1.7e-154 550.1 484 63.0
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.1e-153 547.4 432 66.9
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 6.1e-152 541.6 479 64.5
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.7e-146 523.5 479 61.2
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 6.2e-144 515.0 479 61.0
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.4e-143 513.8 464 61.4
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.3e-143 513.1 481 60.7
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.8e-143 511.5 481 60.5
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 3.4e-142 509.2 481 60.9
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 4.4e-142 508.8 460 62.2
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 7.5e-142 508.1 476 60.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 8.3e-141 504.6 482 60.2
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.1e-140 504.2 484 59.3
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.4e-140 503.8 479 60.3
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.4e-140 503.8 445 61.6
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.2e-139 500.7 481 59.7
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 6.0e-139 498.4 447 62.9
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 2.3e-138 496.5 467 59.1
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.1e-137 494.2 492 57.9
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.1e-137 494.2 417 64.7
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.1e-135 487.6 463 59.8
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 3.1e-135 486.1 467 59.7
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.4e-134 482.6 449 59.0
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 6.4e-133 478.4 479 57.8
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 4.1e-132 475.7 488 56.4
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 2.7e-131 473.0 480 56.2
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 8.6e-130 468.0 461 57.9
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.9e-129 466.8 479 57.4
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 5.6e-129 465.3 473 55.4
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 7.3e-129 464.9 437 58.8
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 9.5e-129 464.5 447 59.1
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 8.1e-128 461.5 453 58.1
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 4.0e-127 459.1 480 55.4
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 8.9e-127 458.0 497 54.1
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.0e-126 456.8 492 53.7
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 2.2e-125 453.4 436 58.3
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 2.9e-125 453.0 385 64.2
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 8.4e-125 451.4 508 52.4
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.1e-124 451.1 497 54.1
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 2.4e-124 449.9 511 52.6
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.2e-123 447.6 504 54.4
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.6e-123 447.2 407 60.0
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 3.5e-123 446.0 501 53.1
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.5e-123 446.0 407 59.7
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.6e-123 445.7 407 59.7
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 7.8e-123 444.9 483 55.7
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 3.0e-122 443.0 494 54.9
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.0e-122 443.0 440 58.0
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 3.9e-122 442.6 490 53.1
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 6.2e-120 435.3 486 52.7
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.2e-119 432.2 453 56.3
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.0e-118 430.3 451 56.3
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 2.6e-118 429.9 483 53.2
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 2.6e-118 429.9 480 52.1
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 3.4e-118 429.5 499 52.1
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 9.9e-118 427.9 488 50.4
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 2.9e-117 426.4 480 52.5
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 6.4e-117 425.2 452 54.0
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 3.5e-115 419.5 480 52.9
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.0e-114 417.9 481 50.1
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.3e-114 417.5 465 52.7
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.3e-114 416.8 497 50.9
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.5e-113 413.3 396 55.6
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 3.3e-113 412.9 486 51.0
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 7.3e-113 411.8 479 51.8
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 8.1e-112 408.3 487 49.9
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.8e-111 407.1 393 57.8
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 2.4e-111 406.8 414 56.0
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 1.5e-110 404.1 425 54.4
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 3.4e-110 402.9 483 48.9
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.3e-109 401.0 419 55.1
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.7e-109 400.6 479 53.0
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.7e-109 400.6 495 49.5
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 2.2e-109 400.2 469 52.2
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 8.4e-109 398.3 442 50.0
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 7.1e-108 395.2 470 50.4
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 7.1e-108 395.2 487 48.7
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.6e-107 394.0 472 51.5
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.7e-107 393.3 457 51.6
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 7.9e-107 391.7 438 51.8
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.3e-106 390.2 432 53.7
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.5e-105 386.7 402 54.5
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 3.7e-104 382.9 389 55.3
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 9.0e-103 378.3 482 47.1
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.5e-102 375.9 342 59.9
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.7e-101 374.0 419 51.6
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 3.8e-101 372.9 395 53.4
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.1e-100 371.3 491 48.7
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 2.4e-100 370.2 414 52.4
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 7.1e-100 368.6 465 48.2
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 6.9e-95 352.1 434 48.2
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.9e-95 352.1 499 43.5
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.3e-93 347.8 497 44.5
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 3.2e-92 343.2 402 49.3
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.6e-91 339.3 423 46.1
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 7.4e-89 332.0 482 44.0
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 4.8e-88 329.3 381 50.4
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 4.8e-88 329.3 402 47.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.7e-85 320.9 394 51.0
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.8e-85 319.7 397 46.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.1e-84 318.2 493 42.2
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 1.4e-84 317.8 485 43.7
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.2e-83 314.7 496 43.1
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.0e-82 311.6 297 58.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.3e-82 311.2 483 42.4
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.8e-82 310.8 496 41.3
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.8e-80 303.5 201 74.1
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 8.2e-80 302.0 495 42.0
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 8.2e-80 302.0 495 42.0
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 2.6e-78 297.0 204 72.5
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 1.4e-76 291.2 231 62.3
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.9e-76 290.8 380 45.3
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.0e-73 280.8 345 44.1
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 7.4e-73 278.9 426 40.8
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.7e-72 277.7 485 39.0
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.1e-71 275.0 451 40.1
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.8e-71 274.2 451 40.6
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.8e-71 274.2 470 40.0
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.6e-70 270.4 496 35.5
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 3.4e-70 270.0 391 39.9
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 9.4e-68 261.9 394 40.4
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 2.4e-63 247.3 201 60.7
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.9e-61 240.4 412 40.0
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.0e-61 239.6 411 38.4
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.7e-57 226.1 482 35.3
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.7e-56 223.4 405 39.8
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 9.1e-55 218.8 430 36.7
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 7.7e-54 215.7 433 35.6
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 8.5e-53 212.2 479 34.7
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.5e-52 209.5 390 36.9
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.2e-51 208.4 160 63.1
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 6.8e-50 202.6 150 66.7
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 6.8e-50 202.6 150 66.7
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 4.7e-43 179.9 167 55.1
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.5e-41 174.9 168 53.6
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.4e-39 167.5 170 51.8
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.1e-39 167.2 438 30.6
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 2.5e-36 157.5 109 66.1
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.6e-36 156.4 380 31.8
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.0e-34 152.1 147 51.7
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.0e-33 147.9 329 35.0
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.7e-32 144.8 162 45.7
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 6.4e-32 142.9 295 36.6
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 6.4e-32 142.9 295 36.6
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 7.8e-30 136.0 331 35.6
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.5e-20 105.1 264 31.1
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 6.0e-14 83.2 110 47.3
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.4e-10 71.2 121 36.4
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.4e-08 63.2 110 30.9


User provided reference genes

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