Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.2e-66 255.4 120 100.0
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.4e-60 236.1 120 93.3
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.2e-59 233.0 120 91.7
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 2.6e-59 231.9 120 91.7
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.4e-57 226.1 120 89.2
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 3.7e-53 211.5 120 84.2
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 1.2e-35 153.3 123 68.3
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 9.4e-33 143.7 135 61.5
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 8.0e-32 140.6 133 59.4
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.1e-20 103.6 113 53.1
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 2.4e-20 102.4 120 50.0
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 5.3e-20 101.3 110 57.3
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 7.7e-19 97.4 122 48.4
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 2.9e-18 95.5 122 48.4
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.9e-18 95.5 108 54.6
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 5.0e-18 94.7 122 49.2
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 6.5e-18 94.4 115 47.8
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.1e-17 93.6 109 53.2
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 2.5e-17 92.4 118 44.1
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.2e-17 92.0 110 52.7
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 5.5e-17 91.3 116 48.3
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 7.2e-17 90.9 97 53.6
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 7.2e-17 90.9 115 47.8
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 9.4e-17 90.5 114 49.1
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 1.2e-16 90.1 104 51.9
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.6e-16 89.7 84 56.0
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 2.1e-16 89.4 112 49.1
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.7e-16 89.0 120 45.0
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 2.7e-16 89.0 120 45.0
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.7e-16 89.0 113 50.4
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 3.6e-16 88.6 110 48.2
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 4.7e-16 88.2 98 49.0
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 6.1e-16 87.8 104 51.9
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 8.0e-16 87.4 117 46.2
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.8e-15 86.3 106 50.9
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 5.2e-15 84.7 67 62.7
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 5.2e-15 84.7 99 51.5
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 6.8e-15 84.3 96 47.9
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 6.8e-15 84.3 102 50.0
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 8.8e-15 84.0 102 49.0
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 8.8e-15 84.0 121 43.8
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 8.8e-15 84.0 115 51.3
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 1.2e-14 83.6 105 44.8
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 1.5e-14 83.2 108 46.3
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 2.0e-14 82.8 119 43.7
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 2.0e-14 82.8 104 48.1
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 2.6e-14 82.4 111 42.3
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 3.4e-14 82.0 108 46.3
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 4.4e-14 81.6 84 51.2
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 4.4e-14 81.6 111 45.9
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 5.7e-14 81.3 101 47.5
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 7.5e-14 80.9 121 42.1
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.5e-14 80.9 87 49.4
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 7.5e-14 80.9 109 42.2
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 9.8e-14 80.5 110 43.6
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 9.8e-14 80.5 54 70.4
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 9.8e-14 80.5 120 44.2
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.3e-13 80.1 115 46.1
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.3e-13 80.1 83 50.6
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.7e-13 79.7 87 50.6
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 2.2e-13 79.3 50 74.0
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.2e-13 79.3 87 51.7
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 2.2e-13 79.3 90 53.3
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 2.8e-13 79.0 119 41.2
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 3.7e-13 78.6 95 49.5
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 4.8e-13 78.2 121 41.3
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 4.8e-13 78.2 108 42.6
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 4.8e-13 78.2 108 42.6
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 4.8e-13 78.2 108 44.4
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 4.8e-13 78.2 85 51.8
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 6.3e-13 77.8 114 43.0
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 6.3e-13 77.8 107 43.9
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 6.3e-13 77.8 107 43.9
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 6.3e-13 77.8 108 45.4
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 8.3e-13 77.4 101 47.5
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 8.3e-13 77.4 108 42.6
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 8.3e-13 77.4 108 42.6
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 8.3e-13 77.4 118 39.8
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 1.8e-12 76.3 109 42.2
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 2.4e-12 75.9 108 41.7
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 2.4e-12 75.9 59 61.0
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 3.1e-12 75.5 66 60.6
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 4.1e-12 75.1 59 62.7
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 5.4e-12 74.7 108 42.6
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 5.4e-12 74.7 108 42.6
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 7.0e-12 74.3 60 55.0
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 9.1e-12 73.9 113 40.7
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.6e-11 73.2 117 41.9
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 2.0e-11 72.8 108 41.7
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.0e-11 72.8 92 40.2
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 2.0e-11 72.8 110 43.6
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 3.5e-11 72.0 109 42.2
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 4.5e-11 71.6 104 42.3
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 4.5e-11 71.6 114 40.4
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 5.9e-11 71.2 48 70.8
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 5.9e-11 71.2 108 42.6
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 5.9e-11 71.2 51 62.7
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.0e-10 70.5 101 41.6
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.7e-10 69.7 48 66.7
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 1.7e-10 69.7 49 67.3
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 2.9e-10 68.9 60 56.7
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.5e-09 66.6 49 65.3
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 1.9e-09 66.2 56 53.6
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 2.5e-09 65.9 95 41.1
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.2e-09 65.1 86 47.7
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 5.5e-09 64.7 46 58.7
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.6e-08 63.2 52 53.8
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 2.8e-08 62.4 42 64.3
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 2.8e-08 62.4 83 41.0
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 3.6e-08 62.0 78 46.2
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 3.6e-08 62.0 42 61.9
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 3.6e-08 62.0 59 49.2
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 4.7e-08 61.6 106 40.6
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 8.0e-08 60.8 57 47.4
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 8.0e-08 60.8 52 53.8
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.4e-07 60.1 48 54.2
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.8e-07 59.7 72 48.6
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 5.2e-07 58.2 88 42.0
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 6.8e-07 57.8 68 47.1
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 8.9e-07 57.4 86 39.5
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 1.2e-06 57.0 108 37.0
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 1.2e-06 57.0 39 53.8
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 1.2e-06 57.0 80 38.8
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.5e-06 56.6 40 60.0
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 2.0e-06 56.2 65 41.5
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 2.6e-06 55.8 98 36.7
PSO478G5163 Papaver somniferum HOM05D008232 ORTHO05D010390 2.6e-06 55.8 38 52.6
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 2.6e-06 55.8 69 42.0
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 9.8e-06 53.9 48 54.2


User provided reference genes

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