Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.3e-188 662.9 336 100.0
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 2.1e-178 629.0 347 93.7
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 3.4e-173 611.7 351 92.0
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 4.9e-172 607.8 351 91.2
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 7.6e-165 583.9 351 86.3
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 1.9e-131 473.0 355 70.7
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 1.2e-120 437.2 353 68.6
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 8.8e-113 411.0 348 62.9
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 1.5e-112 410.2 354 62.4
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 3.1e-110 402.5 345 63.8
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.2e-109 400.6 350 61.1
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 4.5e-109 398.7 346 62.4
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 5.0e-108 395.2 354 59.0
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 1.1e-107 394.0 355 59.2
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 4.2e-107 392.1 336 62.2
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 7.2e-107 391.3 358 59.5
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 1.6e-106 390.2 353 60.1
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 2.1e-106 389.8 357 58.8
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 2.1e-106 389.8 354 59.3
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 2.8e-106 389.4 353 60.1
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 3.0e-105 386.0 352 59.1
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 8.9e-105 384.4 310 63.9
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 8.9e-105 384.4 354 58.5
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 2.0e-104 383.3 355 59.2
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 9.8e-104 380.9 349 58.7
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 1.3e-103 380.6 338 60.4
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 2.8e-103 379.4 324 62.0
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 3.7e-103 379.0 304 65.1
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 4.9e-103 378.6 299 65.2
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 6.3e-103 378.3 304 64.1
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 6.3e-103 378.3 351 57.5
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 1.1e-102 377.5 350 60.3
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 1.4e-102 377.1 349 58.7
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 7.0e-102 374.8 319 62.4
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 9.2e-102 374.4 308 63.6
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 1.2e-101 374.0 353 59.5
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 2.0e-101 373.2 298 64.4
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 2.0e-101 373.2 298 64.4
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 3.5e-101 372.5 307 63.2
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 4.5e-101 372.1 311 62.7
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 1.0e-100 370.9 356 57.3
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 1.0e-100 370.9 310 62.9
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 1.3e-100 370.5 348 58.3
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 2.3e-100 369.8 320 63.4
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 8.6e-100 367.9 342 57.9
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.1e-99 367.5 360 57.2
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 3.3e-99 365.9 309 63.1
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 3.3e-99 365.9 308 64.0
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 4.3e-99 365.5 312 61.2
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 2.8e-98 362.8 362 55.2
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 8.0e-98 361.3 362 55.0
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 8.0e-98 361.3 302 63.6
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 1.8e-97 360.1 309 59.9
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 1.8e-97 360.1 308 64.0
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 2.3e-97 359.8 308 64.0
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 8.9e-97 357.8 320 61.6
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 1.5e-96 357.1 305 60.7
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 4.4e-96 355.5 309 61.8
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 2.2e-95 353.2 321 60.4
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 1.4e-94 350.5 325 58.8
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 9.2e-94 347.8 305 58.4
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 9.2e-94 347.8 306 61.8
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 4.6e-93 345.5 305 59.3
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 4.6e-93 345.5 306 60.8
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.0e-92 344.4 302 59.6
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 3.9e-92 342.4 310 57.7
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 6.6e-92 341.7 310 57.4
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 1.1e-91 340.9 313 56.5
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 1.9e-91 340.1 312 55.4
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 2.5e-91 339.7 311 56.9
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 7.3e-91 338.2 267 65.5
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 9.5e-91 337.8 291 61.9
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 1.2e-90 337.4 310 57.7
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 2.1e-90 336.7 280 63.9
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 2.1e-90 336.7 303 58.4
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 6.2e-90 335.1 312 57.1
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 8.0e-90 334.7 308 56.8
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 8.0e-90 334.7 310 57.4
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 1.1e-89 334.3 310 57.4
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 1.8e-89 333.6 310 57.4
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 5.2e-89 332.0 291 61.2
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 5.2e-89 332.0 309 60.2
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 5.8e-88 328.6 318 56.3
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 8.3e-87 324.7 277 61.7
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 1.9e-86 323.6 308 57.1
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 3.2e-86 322.8 313 55.6
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 1.6e-85 320.5 263 64.6
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 6.6e-84 315.1 353 49.9
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 1.9e-83 313.5 293 57.7
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 5.6e-83 312.0 349 49.6
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 3.6e-82 309.3 403 47.1
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 4.7e-82 308.9 308 56.2
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 1.7e-79 300.4 316 53.2
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.7e-79 300.4 282 59.2
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 1.9e-78 297.0 239 65.3
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 4.6e-77 292.4 305 52.1
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 6.0e-77 292.0 308 54.5
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 3.9e-76 289.3 294 56.1
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 1.2e-74 284.3 266 59.0
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.8e-73 280.4 287 56.8
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 5.1e-68 262.3 188 69.7
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 1.5e-40 171.0 203 52.7
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 7.6e-40 168.7 234 45.7
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.1e-35 154.8 140 56.4
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 1.8e-33 147.5 219 40.6
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 2.9e-31 140.2 327 31.8
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.5e-27 127.9 233 39.1
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 7.4e-27 125.6 295 31.2
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 9.7e-27 125.2 343 28.3
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 2.2e-26 124.0 298 30.9
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.4e-25 121.3 338 30.5
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 3.1e-25 120.2 118 53.4
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 8.5e-23 112.1 137 45.3
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 7.2e-22 109.0 325 25.2
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 2.3e-20 104.0 72 68.1
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 2.8e-10 70.5 220 28.6


User provided reference genes

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