Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1606 Fragaria x ananassa HOM05D003854 ORTHO05D004415 8.0e-123 443.7 219 100.0
FAN24G1697 Fragaria x ananassa HOM05D003854 ORTHO05D004415 5.7e-60 235.0 234 59.4
RcHm_v2.0_Chr6g0268321 Rosa chinensis HOM05D003854 ORTHO05D004415 9.7e-52 207.6 196 58.7
FvH4_2g10631 Fragaria vesca HOM05D003854 ORTHO05D004415 1.4e-50 203.8 160 70.0
Prupe.8G083500 Prunus persica HOM05D003854 ORTHO05D004415 1.1e-42 177.6 219 48.4
MD05G1054700 Malus domestica HOM05D003854 ORTHO05D004415 3.1e-42 176.0 208 48.6
MD10G1062200 Malus domestica HOM05D003854 ORTHO05D004415 9.1e-42 174.5 234 45.3
Potri.009G125200 Populus trichocarpa HOM05D003854 ORTHO05D004415 4.5e-41 172.2 234 43.2
CiPaw.05G074000 Carya illinoinensis HOM05D003854 ORTHO05D004415 2.9e-40 169.5 187 52.9
Sabra09G0096200 Salix brachista HOM05D003854 ORTHO05D004415 2.9e-40 169.5 234 42.7
Hma1.2p1_0218F.1_g092290 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 6.5e-40 168.3 233 41.6
FAN15G1017 Fragaria x ananassa HOM05D003854 ORTHO05D004415 8.5e-40 167.9 232 42.2
FvH4_2g10640 Fragaria vesca HOM05D003854 ORTHO05D004415 5.5e-39 165.2 232 42.2
Potri.004G163600 Populus trichocarpa HOM05D003854 ORTHO05D004415 1.6e-38 163.7 234 42.3
Haze_02230 Corylus avellana HOM05D003854 ORTHO05D004415 1.8e-37 160.2 222 44.6
FAN27G2026 Fragaria x ananassa HOM05D003854 ORTHO05D004415 3.9e-37 159.1 232 40.9
RcHm_v2.0_Chr6g0268341 Rosa chinensis HOM05D003854 ORTHO05D004415 8.8e-37 157.9 235 42.1
Ciclev10028796m.g Citrus clementina HOM05D003854 ORTHO05D004415 1.1e-36 157.5 224 43.8
Atru.chr5.3170 Acer truncatum HOM05D003854 ORTHO05D004415 3.3e-36 156.0 238 42.4
Cc02_g16850 Coffea canephora HOM05D003854 ORTHO05D004415 5.7e-36 155.2 207 43.0
Sp3g29800 Schrenkiella parvula HOM05D003854 ORTHO05D004415 7.4e-36 154.8 222 42.8
TAR376G0190 Trochodendron aralioides HOM05D003854 ORTHO05D004415 2.8e-35 152.9 232 41.4
Hma1.2p1_0066F.1_g035740 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 3.7e-35 152.5 232 39.7
PGR042G3425 Punica granatum HOM05D003854 ORTHO05D004415 3.7e-35 152.5 222 41.4
COL.COLO4_10619 Corchorus olitorius HOM05D003854 ORTHO05D004415 4.8e-35 152.1 237 40.1
Nn5g29249 Nelumbo nucifera HOM05D003854 ORTHO05D004415 6.3e-35 151.8 219 44.3
BraA09t36743Z Brassica rapa HOM05D003854 ORTHO05D004415 8.2e-35 151.4 206 45.1
BraA07t28241Z Brassica rapa HOM05D003854 ORTHO05D004415 1.4e-34 150.6 212 43.4
Lj5A188T38 Lonicera japonica HOM05D003854 ORTHO05D004415 1.4e-34 150.6 223 41.7
Actinidia20473 Actinidia chinensis HOM05D003854 ORTHO05D004415 1.8e-34 150.2 234 41.5
QL11p046566 Quercus lobata HOM05D003854 ORTHO05D004415 1.8e-34 150.2 222 42.8
Aa31LG8G13840 Aethionema arabicum HOM05D003854 ORTHO05D004415 2.4e-34 149.8 222 41.0
MELO3C002788.2 Cucumis melo HOM05D003854 ORTHO05D004415 3.1e-34 149.4 234 40.6
Thhalv10022773m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 3.1e-34 149.4 222 41.4
vmacro17417 Vaccinium macrocarpon HOM05D003854 ORTHO05D004415 3.1e-34 149.4 234 41.0
BcaB03g16370 Brassica carinata HOM05D003854 ORTHO05D004415 4.1e-34 149.1 233 40.8
CAN.G170.108 Capsicum annuum HOM05D003854 ORTHO05D004415 4.1e-34 149.1 223 41.7
CsaV3_7G000470 Cucumis sativus L. HOM05D003854 ORTHO05D004415 7.0e-34 148.3 202 45.0
BolC7t41138H Brassica oleracea HOM05D003854 ORTHO05D004415 9.1e-34 147.9 234 39.7
CiPaw.06G127600 Carya illinoinensis HOM05D003854 ORTHO05D004415 9.1e-34 147.9 237 40.1
CANSAT11G1548 Cannabis sativa HOM05D003854 ORTHO05D004415 1.2e-33 147.5 211 42.7
ClCG02G004480 Citrullus lanatus HOM05D003854 ORTHO05D004415 1.6e-33 147.1 234 40.6
Solyc01g110460.4 Solanum lycopersicum HOM05D003854 ORTHO05D004415 3.5e-33 146.0 233 39.5
A09p11030 Brassica napus HOM05D003854 ORTHO05D004415 4.5e-33 145.6 202 44.6
Eucgr.G01738 Eucalyptus grandis HOM05D003854 ORTHO05D004415 4.5e-33 145.6 222 41.4
GSVIVG01024163001 Vitis vinifera HOM05D003854 ORTHO05D004415 5.9e-33 145.2 206 42.2
Manes.04G064400 Manihot esculenta HOM05D003854 ORTHO05D004415 7.7e-33 144.8 229 38.9
BolC9t54197H Brassica oleracea HOM05D003854 ORTHO05D004415 1.3e-32 144.1 202 44.1
Sopen01g052590 Solanum pennellii HOM05D003854 ORTHO05D004415 1.3e-32 144.1 233 39.5
COL.COLO4_21950 Corchorus olitorius HOM05D003854 ORTHO05D004415 1.7e-32 143.7 234 40.6
Thhalv10000231m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 1.7e-32 143.7 220 40.0
GSVIVG01018810001 Vitis vinifera HOM05D003854 ORTHO05D004415 2.2e-32 143.3 232 40.9
Rhsim05G0067900 Rhododendron simsii HOM05D003854 ORTHO05D004415 2.9e-32 142.9 227 39.6
BcaC04g23013 Brassica carinata HOM05D003854 ORTHO05D004415 5.0e-32 142.1 203 44.8
C07p07190 Brassica napus HOM05D003854 ORTHO05D004415 5.0e-32 142.1 238 39.5
C09p13040 Brassica napus HOM05D003854 ORTHO05D004415 5.0e-32 142.1 203 44.8
Hund00176 Selenicereus undatus HOM05D003854 ORTHO05D004415 6.5e-32 141.7 235 38.3
MSTRG.16879 Avicennia marina HOM05D003854 ORTHO05D004415 1.9e-31 140.2 224 39.7
Sed0011434 Sechium edule HOM05D003854 ORTHO05D004415 1.9e-31 140.2 208 42.8
Phvul.011G038300 Phaseolus vulgaris HOM05D003854 ORTHO05D004415 7.2e-31 138.3 217 40.6
Duzib147G1035 Durio zibethinus HOM05D003854 ORTHO05D004415 1.2e-30 137.5 233 38.6
Duzib248G1248 Durio zibethinus HOM05D003854 ORTHO05D004415 2.1e-30 136.7 206 41.3
Lalb_Chr01g0002121 Lupinus albus HOM05D003854 ORTHO05D004415 2.7e-30 136.3 214 40.7
Cpa.g.sc150.10 Carica papaya HOM05D003854 ORTHO05D004415 4.7e-30 135.6 234 38.5
HanXRQChr15g0478351 Helianthus annuus HOM05D003854 ORTHO05D004415 4.7e-30 135.6 221 39.8
Lsat_1_v5_gn_3_44581 Lactuca sativa HOM05D003854 ORTHO05D004415 4.7e-30 135.6 231 39.4
Oeu060416.1 Olea europaea HOM05D003854 ORTHO05D004415 4.7e-30 135.6 203 40.9
ECA248G3380 Erigeron canadensis HOM05D003854 ORTHO05D004415 8.0e-30 134.8 223 38.1
Aa31LG10G12850 Aethionema arabicum HOM05D003854 ORTHO05D004415 1.8e-29 133.7 222 39.6
THA.LOC104807290 Tarenaya hassleriana HOM05D003854 ORTHO05D004415 5.2e-29 132.1 222 39.2
AT1G72590 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 6.7e-29 131.7 212 39.2
MBI19_g04330_MAGBIO Magnolia biondii HOM05D003854 ORTHO05D004415 6.7e-29 131.7 214 40.7
AL6G49210 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 8.8e-29 131.3 234 38.0
ECA246G0289 Erigeron canadensis HOM05D003854 ORTHO05D004415 8.8e-29 131.3 223 37.7
Thecc.01G021700 Theobroma cacao HOM05D003854 ORTHO05D004415 8.8e-29 131.3 228 38.6
AUR62016846 Chenopodium quinoa HOM05D003854 ORTHO05D004415 1.2e-28 131.0 223 39.5
Duzib187G0007 Durio zibethinus HOM05D003854 ORTHO05D004415 1.2e-28 131.0 232 38.4
Lj3g0001283 Lotus japonicus HOM05D003854 ORTHO05D004415 2.0e-28 130.2 218 39.0
Aqoxy6G02342 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 2.6e-28 129.8 232 36.2
Ca_20939_v3 Cicer arietinum L. HOM05D003854 ORTHO05D004415 2.6e-28 129.8 202 40.1
Gorai.011G293600 Gossypium raimondii HOM05D003854 ORTHO05D004415 2.6e-28 129.8 233 37.3
Sp3g29790 Schrenkiella parvula HOM05D003854 ORTHO05D004415 2.6e-28 129.8 234 37.2
TWI38G0305 Tripterygium wilfordii HOM05D003854 ORTHO05D004415 5.7e-28 128.6 196 40.8
Gohir.A10G241100 Gossypium hirsutum HOM05D003854 ORTHO05D004415 7.5e-28 128.3 233 37.3
EL10Ac9g21623 Beta vulgaris HOM05D003854 ORTHO05D004415 1.3e-27 127.5 228 36.8
Gohir.A02G169600 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.3e-27 127.5 229 37.6
arahy.Tifrunner.gnm1.ann1.3VNM1Z Arachis hypogaea HOM05D003854 ORTHO05D004415 1.7e-27 127.1 215 39.1
BcaC06g36152 Brassica carinata HOM05D003854 ORTHO05D004415 2.2e-27 126.7 234 36.8
Glyma.11G110300 Glycine max HOM05D003854 ORTHO05D004415 2.2e-27 126.7 218 38.1
BcaC01g03005 Brassica carinata HOM05D003854 ORTHO05D004415 3.7e-27 125.9 196 38.3
AL3G49110 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 4.8e-27 125.6 226 37.6
arahy.Tifrunner.gnm1.ann1.JJ9I6U Arachis hypogaea HOM05D003854 ORTHO05D004415 4.8e-27 125.6 217 38.2
Migut.H02258 Erythranthe guttata HOM05D003854 ORTHO05D004415 4.8e-27 125.6 220 37.3
Gorai.001G243600 Gossypium raimondii HOM05D003854 ORTHO05D004415 4.8e-27 125.6 173 43.4
PSO541G5287 Papaver somniferum HOM05D003854 ORTHO05D004415 4.8e-27 125.6 233 36.5
TPR.G28160 Trifolium pratense HOM05D003854 ORTHO05D004415 4.8e-27 125.6 215 40.9
Lsat_1_v5_gn_3_44301 Lactuca sativa HOM05D003854 ORTHO05D004415 6.3e-27 125.2 182 41.8
AT2G16530 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 8.2e-27 124.8 234 37.2
arahy.Tifrunner.gnm1.ann1.29MT7J Arachis hypogaea HOM05D003854 ORTHO05D004415 8.2e-27 124.8 217 37.8
Gohir.D13G096525 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.1e-26 124.4 173 42.8
Gohir.D03G010400 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.8e-26 123.6 229 36.2
Thecc.02G073800 Theobroma cacao HOM05D003854 ORTHO05D004415 2.4e-26 123.2 232 36.2
Gohir.A13G086490 Gossypium hirsutum HOM05D003854 ORTHO05D004415 4.1e-26 122.5 173 42.8
Gorai.003G010800 Gossypium raimondii HOM05D003854 ORTHO05D004415 4.1e-26 122.5 233 35.2
Medtr4g072070 Medicago truncatula HOM05D003854 ORTHO05D004415 4.1e-26 122.5 215 39.1
VMungo1127G2166 Vigna mungo HOM05D003854 ORTHO05D004415 4.1e-26 122.5 215 37.7
arahy.Tifrunner.gnm1.ann1.QESS4Q Arachis hypogaea HOM05D003854 ORTHO05D004415 5.3e-26 122.1 215 38.6
CARHR106750 Cardamine hirsuta HOM05D003854 ORTHO05D004415 7.0e-26 121.7 214 37.9
Glyma.12G036600 Glycine max HOM05D003854 ORTHO05D004415 7.0e-26 121.7 218 35.8
Sc18g0005420 Simmondsia chinensis HOM05D003854 ORTHO05D004415 7.0e-26 121.7 216 37.5
SGA_v2.0_scaffold2G00942 Striga asiatica HOM05D003854 ORTHO05D004415 7.0e-26 121.7 215 35.8
ATR0149G029 Amborella trichopoda HOM05D003854 ORTHO05D004415 2.0e-25 120.2 217 36.4
Psat7g139560 Pisum sativum HOM05D003854 ORTHO05D004415 2.0e-25 120.2 224 38.4
Carub.0003s3031 Capsella rubella HOM05D003854 ORTHO05D004415 2.7e-25 119.8 226 36.3
PSO675G2881 Papaver somniferum HOM05D003854 ORTHO05D004415 2.7e-25 119.8 226 35.8
A03p45890 Brassica napus HOM05D003854 ORTHO05D004415 1.0e-24 117.9 211 38.9
Aqoxy3G00105 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 2.9e-24 116.3 182 40.7
C03p57260 Brassica napus HOM05D003854 ORTHO05D004415 2.9e-24 116.3 164 42.1
BolC3t18002H Brassica oleracea HOM05D003854 ORTHO05D004415 2.9e-24 116.3 164 42.1
BcaC04g23014 Brassica carinata HOM05D003854 ORTHO05D004415 3.8e-24 115.9 182 42.9
Thecc.10G037600 Theobroma cacao HOM05D003854 ORTHO05D004415 5.0e-24 115.5 222 34.2
BraA03t13719Z Brassica rapa HOM05D003854 ORTHO05D004415 8.5e-24 114.8 176 43.2
FAN20G2911 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.1e-23 114.4 168 41.1
SalBow3G0187 Salvia bowleyana HOM05D003854 ORTHO05D004415 2.5e-23 113.2 208 34.6
Lsat_1_v5_gn_3_44541 Lactuca sativa HOM05D003854 ORTHO05D004415 3.2e-23 112.8 184 40.2
Atru.chr5.3158 Acer truncatum HOM05D003854 ORTHO05D004415 4.2e-23 112.5 169 42.6
BraA03t13718Z Brassica rapa HOM05D003854 ORTHO05D004415 7.2e-23 111.7 222 36.0
Peaxi162Scf00016g00041 Petunia axillaris HOM05D003854 ORTHO05D004415 7.2e-23 111.7 214 37.4
BcaC01g03007 Brassica carinata HOM05D003854 ORTHO05D004415 9.4e-23 111.3 222 36.5
C03p57250 Brassica napus HOM05D003854 ORTHO05D004415 9.4e-23 111.3 222 36.5
A03p45880 Brassica napus HOM05D003854 ORTHO05D004415 1.2e-22 110.9 222 36.5
arahy.Tifrunner.gnm1.ann1.E6R97N Arachis hypogaea HOM05D003854 ORTHO05D004415 3.6e-22 109.4 215 36.3
BcaB08g34654 Brassica carinata HOM05D003854 ORTHO05D004415 1.8e-21 107.1 205 37.1
A07p04500 Brassica napus HOM05D003854 ORTHO05D004415 1.5e-20 104.0 166 40.4
CDE04G0582 Ceratophyllum demersum HOM05D003854 ORTHO05D004415 2.0e-20 103.6 173 39.9
Hund00184 Selenicereus undatus HOM05D003854 ORTHO05D004415 1.7e-19 100.5 203 33.5
DCAR_029109 Daucus carota HOM05D003854 ORTHO05D004415 3.7e-19 99.4 168 39.3
Nitab4.5_0005266g0010 Nicotiana tabacum HOM05D003854 ORTHO05D004415 8.3e-19 98.2 169 39.1
Dinv41992 Davidia involucrata HOM05D003854 ORTHO05D004415 1.0e-16 91.3 94 53.2
Eucgr.H01470 Eucalyptus grandis HOM05D003854 ORTHO05D004415 1.3e-16 90.9 82 56.1
Nitab4.5_0008276g0050 Nicotiana tabacum HOM05D003854 ORTHO05D004415 6.5e-16 88.6 62 67.7
HanXRQChr17g0544071 Helianthus annuus HOM05D003854 ORTHO05D004415 8.5e-16 88.2 193 32.6
CSS0003544 Camellia sinensis var. sinensis HOM05D003854 ORTHO05D004415 1.9e-15 87.0 93 51.6
SEGI_09637 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 3.2e-15 86.3 209 28.7
arahy.Tifrunner.gnm1.ann1.VP2AIV Arachis hypogaea HOM05D003854 ORTHO05D004415 4.2e-15 85.9 139 42.4
BolC3t18001H Brassica oleracea HOM05D003854 ORTHO05D004415 5.5e-15 85.5 158 36.7
MELO3C028750.2 Cucumis melo HOM05D003854 ORTHO05D004415 2.8e-14 83.2 61 63.9
Sp3g29780 Schrenkiella parvula HOM05D003854 ORTHO05D004415 3.6e-14 82.8 82 57.3
Gohir.D10G253300 Gossypium hirsutum HOM05D003854 ORTHO05D004415 4.0e-13 79.3 184 32.1
Ah.01g018700 Amaranthus hybridus HOM05D003854 ORTHO05D004415 6.8e-13 78.6 169 33.1
Actinidia00577 Actinidia chinensis HOM05D003854 ORTHO05D004415 2.6e-12 76.6 216 30.6
arahy.Tifrunner.gnm1.ann1.EIL6RR Arachis hypogaea HOM05D003854 ORTHO05D004415 3.4e-12 76.3 167 36.5
arahy.Tifrunner.gnm1.ann1.DJ2H3Y Arachis hypogaea HOM05D003854 ORTHO05D004415 7.5e-12 75.1 125 40.8
Os07g0493400 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 3.7e-11 72.8 239 29.3
SMO367G0753 Selaginella moellendorffii HOM05D003854 ORTHO05D004415 8.3e-11 71.6 179 27.9
Zm00001eb073390 Zea mays HOM05D003854 ORTHO05D004415 1.1e-10 71.2 94 41.5
HPP92_014428 Vanilla planifolia HOM05D003854 ORTHO05D004415 7.0e-10 68.6 102 39.2
Zm00001eb428540 Zea mays HOM05D003854 ORTHO05D004415 9.2e-10 68.2 94 40.4
Sabra04G0109800 Salix brachista HOM05D003854 ORTHO05D004415 1.2e-09 67.8 52 61.5
Os04g0576800 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 1.6e-09 67.4 185 29.7
Ah.01g018690 Amaranthus hybridus HOM05D003854 ORTHO05D004415 3.5e-09 66.2 51 60.8
Actinidia02250 Actinidia chinensis HOM05D003854 ORTHO05D004415 9.5e-07 58.2 53 52.8


User provided reference genes

Program Settings