Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.2e-43 179.5 90 100.0
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 2.6e-27 125.2 74 89.2
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.6e-27 125.2 74 89.2
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.6e-27 125.2 74 89.2
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 7.5e-27 123.6 74 87.8
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 4.9e-26 120.9 74 85.1
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 6.4e-26 120.6 74 83.8
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 6.4e-26 120.6 74 83.8
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 6.4e-26 120.6 74 83.8
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 6.4e-26 120.6 74 83.8
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 8.3e-26 120.2 74 82.4
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 8.3e-26 120.2 74 83.8
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 1.1e-25 119.8 74 83.8
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 1.1e-25 119.8 74 82.4
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.1e-25 119.8 74 82.4
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.1e-25 119.8 74 82.4
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.1e-25 119.8 74 83.8
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 1.1e-25 119.8 74 83.8
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 1.4e-25 119.4 74 83.8
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 1.4e-25 119.4 74 83.8
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.4e-25 119.4 74 83.8
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.9e-25 119.0 74 81.1
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 1.9e-25 119.0 74 83.8
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.9e-25 119.0 74 82.4
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.9e-25 119.0 74 82.4
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.9e-25 119.0 74 82.4
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.9e-25 119.0 74 83.8
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.2e-25 118.2 74 82.4
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.2e-25 118.2 74 82.4
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 3.2e-25 118.2 74 82.4
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 3.2e-25 118.2 74 83.8
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 3.2e-25 118.2 74 83.8
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 3.2e-25 118.2 74 82.4
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 3.2e-25 118.2 74 81.1
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 4.1e-25 117.9 74 81.1
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 4.1e-25 117.9 74 81.1
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 4.1e-25 117.9 74 82.4
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 5.4e-25 117.5 74 82.4
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 7.1e-25 117.1 74 81.1
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 9.2e-25 116.7 74 79.7
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 9.2e-25 116.7 74 81.1
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 9.2e-25 116.7 74 82.4
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 9.2e-25 116.7 74 79.7
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 9.2e-25 116.7 74 81.1
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 9.2e-25 116.7 74 81.1
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.2e-24 116.3 74 79.7
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.2e-24 116.3 74 79.7
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 1.2e-24 116.3 74 81.1
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 1.2e-24 116.3 74 82.4
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.6e-24 115.9 74 81.1
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.6e-24 115.9 74 81.1
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 1.6e-24 115.9 74 81.1
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 1.6e-24 115.9 74 81.1
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 1.6e-24 115.9 74 79.7
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.6e-24 115.9 74 79.7
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 1.6e-24 115.9 74 79.7
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.6e-24 115.9 74 78.4
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 3.5e-24 114.8 74 78.4
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 3.5e-24 114.8 74 78.4
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 3.5e-24 114.8 74 79.7
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 3.5e-24 114.8 74 79.7
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 3.5e-24 114.8 71 84.5
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 4.6e-24 114.4 71 84.5
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 4.6e-24 114.4 74 78.4
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 7.8e-24 113.6 74 77.0
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.0e-23 113.2 74 78.4
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.3e-23 112.8 74 78.4
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 3.0e-23 111.7 74 75.7
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 3.0e-23 111.7 74 75.7
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 3.0e-23 111.7 74 75.7
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 3.0e-23 111.7 74 75.7
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 3.0e-23 111.7 74 75.7
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 3.9e-23 111.3 74 74.3
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 3.9e-23 111.3 74 75.7
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 3.9e-23 111.3 74 75.7
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 5.1e-23 110.9 74 75.7
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 5.1e-23 110.9 71 80.3
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 5.1e-23 110.9 74 75.7
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 6.6e-23 110.5 74 74.3
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 8.6e-23 110.2 74 74.3
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 1.1e-22 109.8 74 74.3
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.5e-22 109.4 74 74.3
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.9e-22 109.0 74 73.0
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.9e-22 109.0 74 73.0
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 3.3e-22 108.2 74 75.7
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 4.3e-22 107.8 72 76.4
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 4.3e-22 107.8 74 73.0
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 4.3e-22 107.8 74 73.0
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 4.3e-22 107.8 74 73.0
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 4.3e-22 107.8 74 73.0
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 4.3e-22 107.8 74 73.0
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 5.6e-22 107.5 74 73.0
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 5.6e-22 107.5 74 73.0
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 5.6e-22 107.5 74 73.0
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 5.6e-22 107.5 74 73.0
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 7.3e-22 107.1 70 78.6
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 7.3e-22 107.1 70 78.6
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 9.5e-22 106.7 74 70.3
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.2e-21 106.3 74 71.6
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 1.6e-21 105.9 74 73.0
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.6e-21 105.9 74 71.6
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 2.8e-21 105.1 74 70.3
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 2.8e-21 105.1 74 68.9
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.7e-21 104.4 74 68.9
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.7e-21 104.4 74 68.9
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 1.4e-20 102.8 76 73.7
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.8e-20 102.4 74 68.9
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 1.8e-20 102.4 74 68.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.4e-20 102.1 71 73.2
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.4e-20 102.1 71 73.2
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.4e-20 102.1 71 73.2
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 2.4e-20 102.1 74 66.2
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.5e-19 99.4 74 64.9
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 4.4e-19 97.8 74 62.2
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 9.9e-19 96.7 74 63.5
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 1.7e-18 95.9 70 68.6
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 5.4e-17 90.9 57 78.9
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 7.1e-17 90.5 68 64.7
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 3.5e-16 88.2 55 80.0
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 6.0e-16 87.4 74 62.2
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.9e-15 84.7 54 81.5
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.1e-14 83.2 54 83.3
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.9e-14 82.4 54 83.3
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 3.6e-13 78.2 95 51.6
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.4e-12 76.3 74 51.4
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.4e-12 76.3 54 75.9
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 2.0e-11 72.4 59 72.9
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 2.6e-11 72.0 66 47.0
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 7.6e-11 70.5 54 66.7
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.7e-10 69.3 51 64.7
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 9.6e-06 53.5 64 42.2


User provided reference genes

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