Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.3e-164 581.6 293 100.0
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.2e-82 309.3 159 96.2
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.7e-81 306.2 162 95.1
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 7.5e-76 288.1 162 89.5
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 3.4e-60 236.1 153 76.5
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 9.2e-58 228.0 116 96.6
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.1e-53 214.5 156 69.9
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.4e-53 214.2 156 67.9
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.4e-53 214.2 166 66.9
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 4.0e-53 212.6 154 68.2
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.2e-52 211.1 154 66.2
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.2e-52 211.1 153 73.2
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 5.8e-52 208.8 155 68.4
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 5.8e-52 208.8 155 68.4
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.1e-50 204.5 154 66.9
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.9e-50 203.8 146 69.9
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 3.5e-49 199.5 150 66.7
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 4.6e-49 199.1 154 65.6
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 7.8e-49 198.4 138 68.8
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.3e-48 197.6 127 74.0
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 3.0e-48 196.4 150 67.3
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.9e-48 196.1 150 64.7
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.9e-47 193.7 160 63.8
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.5e-47 193.4 163 62.6
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 2.5e-47 193.4 140 68.6
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 4.3e-47 192.6 145 66.2
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 9.6e-47 191.4 154 63.0
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 2.1e-46 190.3 144 67.4
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.1e-46 190.3 167 61.7
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.8e-46 189.9 148 64.9
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.8e-46 189.9 164 61.6
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 2.8e-46 189.9 154 63.0
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.6e-46 189.5 159 61.6
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 4.8e-46 189.1 155 61.9
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.2e-46 188.7 135 71.1
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 1.1e-45 188.0 155 60.6
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 2.4e-45 186.8 152 64.5
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.4e-45 186.8 154 61.7
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 4.0e-45 186.0 150 65.3
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 6.9e-45 185.3 155 60.0
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 9.0e-45 184.9 158 61.4
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 9.0e-45 184.9 143 66.4
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 9.0e-45 184.9 154 61.0
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.2e-44 184.5 135 67.4
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.5e-44 184.1 155 58.7
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 1.5e-44 184.1 144 66.7
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.0e-44 183.7 149 61.7
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.0e-44 183.7 129 73.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 2.6e-44 183.3 149 61.1
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 3.4e-44 183.0 150 64.0
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-44 183.0 161 62.1
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-44 182.6 158 63.9
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-44 182.6 158 63.9
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-44 182.6 158 63.9
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 5.8e-44 182.2 137 67.9
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 5.8e-44 182.2 156 62.8
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.3e-43 181.0 143 62.2
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.3e-43 181.0 132 68.9
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.7e-43 180.6 156 60.3
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.9e-43 179.9 140 64.3
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 3.8e-43 179.5 159 56.6
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 4.9e-43 179.1 142 62.0
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 6.4e-43 178.7 149 58.4
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 8.4e-43 178.3 159 61.0
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.1e-42 177.9 133 66.2
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.1e-42 177.9 128 65.6
FAN20G2580 Fragaria x ananassa HOM05D017410 ORTHO05D019204 3.2e-42 176.4 91 97.8
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 4.2e-42 176.0 159 56.6
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 5.4e-42 175.6 159 59.1
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 7.1e-42 175.3 134 65.7
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 9.3e-42 174.9 158 57.0
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 9.3e-42 174.9 132 65.2
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.2e-41 174.5 141 63.8
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 2.7e-41 173.3 128 65.6
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 2.7e-41 173.3 133 65.4
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 2.7e-41 173.3 131 67.2
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 3.5e-41 172.9 144 59.7
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.5e-41 172.9 117 73.5
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 4.6e-41 172.6 133 64.7
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 7.9e-41 171.8 131 65.6
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 1.0e-40 171.4 133 63.9
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 1.3e-40 171.0 149 59.7
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.8e-40 170.6 112 73.2
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 2.3e-40 170.2 141 60.3
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 2.3e-40 170.2 132 65.2
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 3.0e-40 169.9 132 65.2
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 3.9e-40 169.5 137 62.0
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 6.7e-40 168.7 169 52.7
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.7e-40 168.3 141 61.0
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 8.7e-40 168.3 138 63.8
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.5e-39 167.5 167 55.7
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 1.9e-39 167.2 141 60.3
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 2.5e-39 166.8 115 69.6
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 5.6e-39 165.6 127 66.1
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 3.7e-38 162.9 119 65.5
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 8.1e-38 161.8 145 54.5
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 3.1e-37 159.8 154 57.8
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 4.0e-37 159.5 135 63.7
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.0e-37 159.5 134 62.7
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 9.0e-37 158.3 126 61.9
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.2e-36 157.9 122 65.6
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.5e-36 157.5 122 62.3
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.0e-36 157.1 122 65.6
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 7.6e-36 155.2 176 52.3
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 2.9e-35 153.3 119 61.3
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 3.8e-35 152.9 131 63.4
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 6.5e-35 152.1 136 61.0
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 9.3e-34 148.3 130 57.7
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-33 146.7 115 66.1
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.8e-32 144.1 118 63.6
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 3.9e-32 142.9 117 59.0
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.8e-30 136.7 169 46.7
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.1e-29 134.8 114 63.2
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.1e-29 134.8 114 63.2
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.1e-29 134.8 130 53.8
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.1e-29 133.3 118 59.3
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 3.4e-28 129.8 139 49.6
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 4.5e-28 129.4 97 67.0
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 6.5e-27 125.6 137 50.4
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 9.3e-26 121.7 118 56.8
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 8.7e-24 115.2 136 46.3
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 8.2e-22 108.6 152 43.4
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 1.8e-21 107.5 104 58.7
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 7.2e-18 95.5 136 41.9
Prupe.1G443800 Prunus persica HOM05D017410 ORTHO05D019204 2.7e-17 93.6 83 60.2
FAN21G2421 Fragaria x ananassa HOM05D017410 ORTHO05D019204 6.1e-17 92.4 69 72.5
FAN11G2902 Fragaria x ananassa HOM05D017410 ORTHO05D019204 5.1e-16 89.4 71 69.0
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 6.7e-16 89.0 73 64.4
FAN16G1378 Fragaria x ananassa HOM05D017410 ORTHO05D019204 8.8e-16 88.6 69 68.1
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 8.8e-16 88.6 80 55.0
FAN25G2329 Fragaria x ananassa HOM05D017410 ORTHO05D019204 1.3e-14 84.7 69 66.7
QL12p040868 Quercus lobata HOM05D017410 ORTHO05D019204 1.1e-13 81.6 84 56.0
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 4.1e-13 79.7 47 83.0
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 5.0e-11 72.8 44 75.0
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.9e-10 70.9 128 39.8
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 5.5e-10 69.3 130 37.7
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 5.5e-10 69.3 99 47.5
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 9.4e-10 68.6 44 72.7
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-08 62.0 86 36.0
AUR62033068 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.5e-07 61.2 59 55.9
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.7e-07 59.3 43 62.8
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 7.4e-07 58.9 48 56.2
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 1.7e-06 57.8 135 28.9


User provided reference genes

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