Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 4.5e-215 751.1 417 100.0
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 1.1e-205 719.9 417 95.4
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.4e-202 707.2 417 94.2
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.1e-200 703.4 417 93.8
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 4.6e-196 688.0 417 90.6
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 3.0e-150 535.8 437 71.9
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 6.4e-129 464.9 449 65.3
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 8.6e-126 454.5 432 64.4
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.1e-111 406.8 439 59.0
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 3.9e-110 402.5 424 58.7
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 8.7e-110 401.4 437 60.6
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 3.3e-109 399.4 441 61.9
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 6.9e-107 391.7 443 57.1
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 9.9e-106 387.9 433 57.7
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 9.9e-106 387.9 451 57.2
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 6.4e-105 385.2 440 57.3
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 6.0e-103 378.6 441 56.9
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 7.9e-103 378.3 438 54.8
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.8e-102 377.1 446 56.1
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 5.1e-102 375.6 444 56.3
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 3.3e-101 372.9 436 57.3
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 6.9e-99 365.2 457 60.6
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 4.6e-95 352.4 445 58.2
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 4.3e-93 345.9 434 53.7
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 3.1e-91 339.7 474 57.4
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 8.5e-89 331.6 427 49.4
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 1.1e-88 331.3 412 54.9
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.2e-87 327.8 449 52.8
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.3e-86 324.3 457 52.1
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 3.0e-86 323.2 395 53.9
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 6.7e-86 322.0 446 50.0
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.8e-83 313.9 451 48.3
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 5.3e-83 312.4 430 50.2
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 4.5e-82 309.3 421 50.6
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.3e-81 307.8 431 48.7
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.3e-81 307.8 445 50.8
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 5.0e-81 305.8 430 50.0
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.1e-80 304.7 431 48.3
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 7.9e-79 298.5 429 46.9
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.5e-77 294.3 407 51.4
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.7e-77 292.4 431 46.9
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 6.9e-75 285.4 415 48.2
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 4.5e-74 282.7 417 49.6
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 8.5e-73 278.5 424 51.4
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 9.4e-72 275.0 455 48.4
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 1.2e-71 274.6 434 47.5
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 2.1e-71 273.9 479 45.3
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 6.1e-71 272.3 426 47.2
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 1.8e-70 270.8 465 51.2
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 2.3e-70 270.4 415 48.0
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 2.3e-70 270.4 408 47.5
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.3e-70 270.4 418 46.2
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 5.7e-69 265.8 386 47.9
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.4e-67 260.4 420 46.7
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 3.2e-64 250.0 339 48.1
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 5.5e-64 249.2 360 48.9
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 2.1e-63 247.3 416 43.5
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 2.3e-62 243.8 412 47.3
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 4.0e-62 243.0 440 43.9
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 4.0e-62 243.0 408 41.7
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 8.8e-62 241.9 406 47.0
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 4.4e-61 239.6 464 45.7
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 4.8e-60 236.1 447 40.5
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 1.1e-59 235.0 400 47.0
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 7.7e-58 228.8 410 47.1
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 1.3e-57 228.0 429 42.4
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.3e-57 228.0 425 43.3
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.6e-55 221.1 357 43.7
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.7e-55 219.5 455 37.8
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 4.0e-54 216.5 361 46.8
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 6.8e-54 215.7 320 46.6
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 2.0e-53 214.2 403 43.7
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 4.2e-48 196.4 323 42.4
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 5.5e-48 196.1 452 45.1
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 7.2e-48 195.7 406 45.1
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 9.5e-48 195.3 462 43.3
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 2.1e-47 194.1 467 40.0
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.8e-47 193.7 411 39.7
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 1.5e-45 188.0 405 41.2
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 9.8e-45 185.3 412 36.2
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.7e-44 183.3 369 35.8
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 3.7e-44 183.3 350 45.7
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 5.4e-43 179.5 431 35.7
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 9.2e-43 178.7 379 41.2
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 3.3e-40 170.2 412 38.1
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.0e-37 161.0 185 51.4
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 3.4e-37 160.2 411 40.9
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 7.5e-37 159.1 326 39.6
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 1.8e-35 154.5 383 34.5
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.4e-35 154.1 417 31.7
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 1.2e-34 151.8 400 37.5
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 1.2e-34 151.8 223 42.6
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 8.6e-33 145.6 423 32.4
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 3.3e-32 143.7 128 71.9
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 7.3e-32 142.5 353 33.4
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 7.3e-32 142.5 383 34.2
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.1e-31 141.0 132 55.3
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.1e-30 138.7 337 36.8
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 2.0e-29 134.4 116 57.8
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 9.8e-29 132.1 403 34.0
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.2e-27 127.1 386 30.8
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.4e-27 126.3 316 33.2
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.5e-24 118.2 334 37.4
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 5.6e-24 116.3 341 32.3
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 1.2e-23 115.2 125 60.8
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.2e-21 108.6 411 29.9
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 1.3e-20 105.1 110 50.0
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 1.1e-19 102.1 339 29.2
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.9e-19 101.3 410 32.2
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.9e-19 101.3 410 32.2
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 2.4e-19 100.9 437 28.4
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 3.2e-19 100.5 363 28.1
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 3.2e-19 100.5 363 28.1
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.6e-18 98.2 340 32.4
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 2.1e-18 97.8 425 28.9
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 4.6e-18 96.7 353 32.9
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 6.0e-18 96.3 358 31.6
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 6.0e-18 96.3 411 32.4
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 1.0e-17 95.5 314 32.2
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 1.0e-17 95.5 319 32.3
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 1.7e-17 94.7 344 29.9
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 2.3e-17 94.4 171 40.4
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.3e-17 94.4 195 39.0
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 3.0e-17 94.0 408 34.3
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 3.0e-17 94.0 326 32.2
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 3.9e-17 93.6 399 36.3
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 5.1e-17 93.2 162 46.3
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 5.1e-17 93.2 339 33.6
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 5.1e-17 93.2 320 30.0
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 1.9e-16 91.3 396 30.1
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.2e-15 88.6 102 56.9
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 1.6e-15 88.2 400 27.5
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 3.6e-15 87.0 337 34.1
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 8.1e-15 85.9 337 34.1
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.2e-13 82.0 337 33.8
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.2e-13 82.0 337 33.8
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 3.4e-13 80.5 155 41.3
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 4.4e-13 80.1 155 41.3
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 4.4e-13 80.1 155 41.3
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 7.6e-13 79.3 337 33.2
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 9.9e-13 79.0 155 41.3
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 1.7e-12 78.2 155 40.6
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 1.7e-12 78.2 45 88.9
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 5.4e-11 73.2 409 25.4
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 9.2e-11 72.4 229 34.1
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 7.3e-08 62.8 325 26.5
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 4.0e-06 57.0 72 37.5


User provided reference genes

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