Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.7e-206 723.0 868 100.0
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.7e-192 677.2 872 97.1
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 3.6e-174 616.3 870 86.7
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 2.8e-142 510.4 873 87.6
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.7e-136 491.1 868 88.7
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 9.5e-135 485.3 875 86.2
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 3.5e-113 413.7 862 82.9
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 2.5e-111 407.5 864 78.9
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 4.8e-110 403.3 867 81.9
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.2e-108 398.7 870 78.6
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 5.4e-106 389.8 867 74.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 5.1e-104 383.3 868 79.8
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.1e-103 382.1 865 75.7
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 7.4e-103 379.4 869 79.9
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 9.6e-103 379.0 867 80.3
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 9.6e-103 379.0 866 77.1
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 2.8e-102 377.5 863 73.7
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 5.3e-101 373.2 868 75.7
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 3.4e-100 370.5 863 80.3
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 3.8e-99 367.1 869 69.0
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 1.1e-95 355.5 869 76.2
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.0e-91 342.4 863 77.4
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 6.5e-91 339.7 873 75.0
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 9.3e-90 335.9 868 72.6
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 3.9e-88 330.5 868 68.3
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 5.1e-88 330.1 870 72.2
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.9e-87 328.2 866 68.2
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 2.5e-87 327.8 867 77.2
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 3.3e-87 327.4 861 71.4
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.3e-86 325.5 866 73.9
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 4.8e-86 323.6 869 76.6
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.1e-85 322.4 873 74.3
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.8e-85 321.6 877 66.0
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 7.7e-84 316.2 869 70.5
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 7.7e-84 316.2 876 62.6
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.0e-83 315.8 866 74.7
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.7e-83 315.1 863 68.8
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.7e-83 315.1 863 68.8
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 2.2e-83 314.7 869 76.2
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 5.0e-83 313.5 867 67.5
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 8.5e-83 312.8 863 76.8
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.9e-82 311.6 865 76.8
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 4.2e-82 310.5 868 67.9
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 1.2e-81 308.9 868 71.5
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.0e-80 305.8 868 73.4
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 2.3e-80 304.7 869 76.2
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 6.7e-80 303.1 869 75.8
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 6.7e-80 303.1 869 75.7
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.0e-79 301.6 868 73.2
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 9.7e-79 299.3 868 73.0
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 2.2e-78 298.1 868 76.0
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 3.7e-78 297.4 866 76.0
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.4e-77 295.4 865 70.3
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 3.1e-77 294.3 868 72.8
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 3.1e-77 294.3 869 67.3
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 2.0e-76 291.6 867 76.0
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 2.0e-76 291.6 864 64.6
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 7.7e-76 289.7 864 73.3
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 2.2e-75 288.1 438 61.4
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.2e-73 282.3 874 74.4
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 3.6e-73 280.8 863 71.5
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 3.6e-73 280.8 889 70.2
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 1.1e-71 275.8 869 74.6
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 7.4e-71 273.1 869 71.5
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 1.7e-70 271.9 863 75.1
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 2.8e-70 271.2 852 68.4
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 8.2e-70 269.6 861 75.8
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 9.1e-69 266.2 778 80.3
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 2.9e-67 261.2 870 68.5
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.1e-66 259.2 365 72.1
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 9.4e-66 256.1 869 73.4
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.7e-65 254.6 199 63.3
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.5e-63 248.8 367 70.6
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 7.4e-63 246.5 365 70.7
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.7e-62 245.4 361 69.3
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 2.8e-62 244.6 853 74.6
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.8e-61 241.9 374 69.0
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 6.5e-59 233.4 828 73.3
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.2e-58 231.1 803 73.2
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 9.4e-58 229.6 864 69.9
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 9.4e-58 229.6 828 73.2
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.1e-57 228.4 384 65.6
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 3.0e-56 224.6 875 69.7
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 4.8e-54 217.2 830 68.9
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 3.5e-52 211.1 878 69.7
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 5.9e-52 210.3 873 66.6
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 7.7e-52 209.9 377 63.1
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 4.7e-49 200.7 411 51.8
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 4.4e-47 194.1 875 61.1
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 2.3e-43 181.8 740 80.5
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 2.9e-43 181.4 179 48.0
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 5.2e-40 170.6 177 47.5
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 2.6e-39 168.3 366 60.4
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.1e-37 162.9 324 68.5
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 2.4e-37 161.8 881 54.3
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 5.4e-37 160.6 381 58.8
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 4.3e-34 151.0 368 60.6
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 2.6e-31 141.7 94 73.4
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 1.4e-29 136.0 190 41.1
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.4e-29 136.0 179 39.7
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 5.6e-26 124.0 139 46.8
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 2.0e-23 115.5 394 53.6
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.4e-23 114.8 327 58.7
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 6.0e-20 104.0 146 46.6
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 6.6e-19 100.5 98 50.0
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 4.6e-12 77.8 112 39.3
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 1.1e-10 73.2 64 54.7
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 2.2e-06 58.9 71 43.7


User provided reference genes

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