Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 9.6e-50 200.7 178 100.0
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.3e-48 194.9 127 98.4
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 1.2e-47 193.7 127 97.6
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.1e-45 187.2 128 96.1
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 6.5e-38 161.4 122 71.3
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.4e-24 117.1 121 67.8
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 9.4e-21 104.4 125 52.0
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 9.4e-21 104.4 85 77.6
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.0e-19 100.9 120 65.0
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.4e-19 100.5 123 65.9
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 1.8e-19 100.1 124 62.9
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.3e-19 99.8 121 60.3
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.0e-19 99.4 92 57.6
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 1.1e-18 97.4 121 60.3
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 3.3e-18 95.9 120 44.2
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 5.7e-18 95.1 125 64.0
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 2.8e-17 92.8 107 69.2
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 6.3e-17 91.7 88 75.0
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 8.2e-17 91.3 124 54.0
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.1e-16 90.9 121 62.0
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.8e-16 90.1 109 56.9
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 1.8e-16 90.1 89 62.9
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.4e-16 89.7 121 61.2
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.1e-16 89.4 123 61.0
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.1e-16 89.4 71 69.0
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 4.1e-16 89.0 115 61.7
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 4.1e-16 89.0 119 42.9
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 4.1e-16 89.0 108 44.4
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 4.1e-16 89.0 114 61.4
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 6.9e-16 88.2 91 50.5
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 6.9e-16 88.2 127 44.9
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 6.9e-16 88.2 124 58.9
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 9.1e-16 87.8 124 58.9
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 9.1e-16 87.8 126 47.6
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.5e-15 87.0 125 48.8
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 2.0e-15 86.7 82 52.4
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 2.6e-15 86.3 121 52.9
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 7.7e-15 84.7 108 44.4
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 7.7e-15 84.7 114 46.5
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 7.7e-15 84.7 121 53.7
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.0e-14 84.3 89 70.8
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 1.7e-14 83.6 117 44.4
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 2.2e-14 83.2 119 42.0
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 2.2e-14 83.2 88 51.1
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.2e-14 83.2 141 42.6
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.9e-14 82.8 93 47.3
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 3.8e-14 82.4 119 45.4
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 1.1e-13 80.9 71 73.2
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.9e-13 80.1 106 51.9
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 3.2e-13 79.3 121 60.3
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 4.2e-13 79.0 128 49.2
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.2e-13 79.0 114 45.6
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 7.2e-13 78.2 118 42.4
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 7.2e-13 78.2 123 38.2
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 9.4e-13 77.8 119 42.9
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 9.4e-13 77.8 92 59.8
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 9.4e-13 77.8 126 38.1
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-12 77.4 125 48.0
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 1.2e-12 77.4 111 54.1
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.6e-12 77.0 129 41.1
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 1.6e-12 77.0 134 44.8
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 2.1e-12 76.6 120 44.2
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 2.1e-12 76.6 131 44.3
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 2.1e-12 76.6 132 43.9
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.7e-12 76.3 92 46.7
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.7e-12 76.3 92 46.7
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 3.6e-12 75.9 90 54.4
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 3.6e-12 75.9 134 43.3
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 3.6e-12 75.9 86 45.3
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 4.7e-12 75.5 40 70.0
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 4.7e-12 75.5 124 56.5
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 6.1e-12 75.1 124 56.5
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 6.1e-12 75.1 88 42.0
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 6.1e-12 75.1 119 42.0
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 8.0e-12 74.7 68 55.9
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.4e-11 73.9 84 48.8
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.4e-11 73.9 104 47.1
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 1.4e-11 73.9 128 40.6
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 1.4e-11 73.9 80 52.5
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.3e-11 73.2 143 46.2
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 3.0e-11 72.8 87 62.1
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.9e-11 72.4 95 62.1
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.9e-11 72.4 95 62.1
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 3.9e-11 72.4 120 40.0
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.9e-11 72.4 105 48.6
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 5.2e-11 72.0 59 49.2
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 6.7e-11 71.6 127 40.9
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 6.7e-11 71.6 127 40.2
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 6.7e-11 71.6 41 78.0
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 8.8e-11 71.2 90 50.0
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 8.8e-11 71.2 38 84.2
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 8.8e-11 71.2 121 43.8
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 1.1e-10 70.9 73 50.7
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 1.1e-10 70.9 120 52.5
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 1.5e-10 70.5 119 37.8
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 2.0e-10 70.1 38 81.6
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 2.6e-10 69.7 69 53.6
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 2.6e-10 69.7 89 47.2
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.4e-10 68.9 106 39.6
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.7e-10 68.6 40 72.5
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.7e-10 68.6 40 72.5
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.7e-10 68.6 40 72.5
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 5.7e-10 68.6 92 42.4
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 7.4e-10 68.2 97 50.5
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 7.4e-10 68.2 92 43.5
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.3e-09 67.4 90 46.7
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.8e-09 66.2 77 51.9
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 2.8e-09 66.2 68 51.5
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 8.2e-09 64.7 108 33.3
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 1.8e-08 63.5 79 44.3
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 1.8e-08 63.5 41 63.4
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.4e-08 63.2 126 35.7
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 3.1e-08 62.8 111 37.8
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.1e-08 62.4 86 38.4
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.1e-08 62.4 86 38.4
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 4.1e-08 62.4 36 66.7
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 5.3e-08 62.0 122 35.2
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 5.3e-08 62.0 84 57.1
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 9.1e-08 61.2 77 44.2
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 9.1e-08 61.2 68 47.1
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 1.2e-07 60.8 71 47.9
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.6e-07 60.5 106 34.0
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.6e-07 60.5 40 60.0
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 2.0e-07 60.1 126 34.9
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 2.6e-07 59.7 131 31.3
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 2.6e-07 59.7 41 61.0
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 2.6e-07 59.7 65 44.6
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.6e-07 59.7 38 68.4
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 4.5e-07 58.9 41 61.0
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.9e-07 58.5 106 33.0
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 7.7e-07 58.2 81 39.5
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 7.7e-07 58.2 106 33.0
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.0e-06 57.8 40 60.0
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.3e-06 57.4 40 60.0
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.7e-06 57.0 73 43.8
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.7e-06 57.0 55 50.9
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 2.2e-06 56.6 36 55.6
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 2.9e-06 56.2 40 60.0
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.9e-06 56.2 118 32.2
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 3.8e-06 55.8 56 53.6
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 3.8e-06 55.8 105 32.4
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 3.8e-06 55.8 55 45.5
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 3.8e-06 55.8 41 58.5
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 5.0e-06 55.5 38 60.5
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 5.0e-06 55.5 41 56.1
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 5.0e-06 55.5 38 57.9
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 6.5e-06 55.1 41 56.1
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 8.5e-06 54.7 38 57.9


User provided reference genes

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