Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.3e-78 295.0 157 100.0
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.1e-76 288.5 157 98.1
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.1e-76 288.5 157 97.5
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.1e-76 288.5 157 98.1
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-75 286.6 157 97.5
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.2e-73 278.1 157 94.3
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 9.3e-73 276.9 157 93.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.1e-71 271.2 157 94.3
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-70 268.9 157 93.0
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-69 264.6 156 92.9
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-67 260.0 150 90.7
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-65 253.4 142 93.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.6e-61 239.6 155 82.6
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-61 237.7 128 97.7
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 2.6e-59 232.3 155 80.0
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 5.9e-59 231.1 157 79.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 7.2e-57 224.2 144 79.2
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-56 221.9 122 93.4
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-56 221.9 122 93.4
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 4.6e-56 221.5 122 93.4
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-55 220.3 122 92.6
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-55 219.9 122 92.6
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 3.9e-55 218.4 141 77.3
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 5.1e-55 218.0 122 91.8
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 8.7e-55 217.2 141 75.2
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.1e-54 216.9 141 74.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.1e-54 216.9 141 78.7
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.5e-54 216.5 146 73.3
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.5e-54 216.5 142 73.2
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.9e-54 216.1 142 76.1
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.9e-54 216.1 141 78.0
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.9e-54 216.1 142 74.6
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-54 216.1 122 91.0
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.3e-54 215.3 142 78.2
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 4.3e-54 214.9 140 77.1
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 4.3e-54 214.9 140 77.1
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 4.3e-54 214.9 148 73.0
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 4.3e-54 214.9 143 75.5
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.7e-54 214.5 141 78.7
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 5.7e-54 214.5 142 74.6
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.4e-54 214.2 142 73.9
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 9.7e-54 213.8 146 75.3
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.3e-53 213.4 139 76.3
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.6e-53 213.0 139 75.5
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-53 212.2 122 90.2
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.7e-53 211.8 148 72.3
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.7e-53 211.8 146 71.9
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 4.8e-53 211.5 141 75.9
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 8.2e-53 210.7 140 75.0
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 8.2e-53 210.7 141 74.5
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.1e-52 210.3 141 78.0
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.1e-52 210.3 145 71.7
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.4e-52 209.9 140 75.0
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.4e-52 209.9 140 73.6
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.4e-52 209.9 138 75.4
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.4e-52 209.9 138 75.4
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.8e-52 209.5 150 73.3
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 4.1e-52 208.4 140 75.0
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.1e-52 208.4 150 67.3
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 5.3e-52 208.0 142 69.7
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 5.3e-52 208.0 142 69.7
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 5.3e-52 208.0 141 73.8
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 9.1e-52 207.2 139 75.5
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 9.1e-52 207.2 141 72.3
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.2e-51 206.8 144 71.5
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.2e-51 206.8 146 69.9
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 1.5e-51 206.5 143 72.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.5e-51 206.5 146 72.6
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.5e-51 206.5 141 78.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.5e-51 206.5 141 73.8
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 2.0e-51 206.1 140 72.9
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.0e-51 206.1 139 75.5
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.0e-51 206.1 141 73.8
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.6e-51 205.7 143 72.0
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.5e-51 204.9 140 73.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 5.9e-51 204.5 149 70.5
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 7.7e-51 204.1 140 72.1
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.3e-50 203.4 149 69.8
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.3e-50 203.4 140 74.3
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.7e-50 203.0 140 72.9
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 2.9e-50 202.2 147 69.4
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 3.8e-50 201.8 142 71.8
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 3.8e-50 201.8 142 71.8
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 3.8e-50 201.8 142 71.8
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 3.8e-50 201.8 143 70.6
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 3.8e-50 201.8 133 75.2
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 5.0e-50 201.4 172 64.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 6.5e-50 201.1 143 69.9
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 6.5e-50 201.1 143 69.9
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 6.5e-50 201.1 140 72.1
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 6.5e-50 201.1 147 70.7
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 8.5e-50 200.7 143 69.9
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 8.5e-50 200.7 143 69.9
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 8.5e-50 200.7 143 69.9
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.1e-49 200.3 143 69.2
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.4e-49 199.9 141 72.3
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.4e-49 199.9 148 68.2
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.4e-49 199.9 140 70.7
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.9e-49 199.5 140 72.1
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.9e-49 199.5 140 70.7
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.5e-49 199.1 140 70.7
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.5e-49 199.1 149 68.5
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.5e-49 199.1 146 69.9
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 4.2e-49 198.4 146 67.8
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 4.2e-49 198.4 146 67.8
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 7.2e-49 197.6 185 58.4
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.0e-47 193.7 140 71.4
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.8e-47 193.0 147 68.0
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.3e-47 192.6 140 67.1
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 5.1e-47 191.4 153 64.7
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.2e-45 186.0 180 57.8
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 4.8e-45 184.9 199 50.8
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.1e-44 183.7 123 75.6
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 4.1e-44 181.8 116 78.4
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 4.1e-44 181.8 209 50.7
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.2e-43 180.3 116 75.9
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.0e-43 179.5 121 73.6
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 3.4e-43 178.7 115 75.7
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 4.5e-43 178.3 126 69.0
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 7.7e-43 177.6 121 73.6
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.3e-42 176.8 151 60.3
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-42 176.8 116 73.3
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.3e-42 176.8 214 48.6
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.7e-42 176.4 117 76.1
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 2.2e-42 176.0 118 73.7
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 9.4e-41 170.6 227 45.4
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.1e-40 169.5 135 65.2
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 7.9e-40 167.5 142 58.5
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.0e-39 167.2 138 64.5
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.0e-39 167.2 122 67.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.0e-39 165.6 141 56.7
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 3.9e-39 165.2 137 56.9
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.2e-39 164.9 116 70.7
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.2e-39 164.9 116 70.7
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 8.8e-39 164.1 142 54.2
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 2.0e-38 162.9 136 60.3
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 8.5e-34 147.5 155 54.8
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.1e-32 142.9 88 83.0
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 4.4e-30 135.2 87 78.2
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 9.7e-30 134.0 88 77.3
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-29 133.7 78 91.0
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-29 133.7 78 91.0
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 8.2e-29 131.0 78 88.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 4.5e-27 125.2 94 73.4
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-26 123.2 72 91.7
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 5.0e-26 121.7 136 51.5
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 4.2e-25 118.6 146 43.8
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 2.7e-24 115.9 200 37.5
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 4.0e-23 112.1 70 77.1
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 5.2e-23 111.7 82 59.8
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 8.3e-21 104.4 137 38.7
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.6e-19 100.1 64 76.6
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 2.0e-19 99.8 73 63.0
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 2.8e-16 89.4 204 39.7
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 4.4e-14 82.0 59 61.0
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.5e-14 81.3 65 56.9
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.8e-14 80.9 65 56.9
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.3e-13 80.5 142 32.4
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.3e-13 78.2 61 67.2
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.1e-12 75.5 61 65.6
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 7.0e-12 74.7 134 29.1
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.2e-11 73.9 54 68.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.7e-11 72.8 55 69.1
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.7e-11 72.8 55 69.1
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 4.5e-11 72.0 49 65.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.0e-07 59.3 53 49.1
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.4e-06 55.5 56 51.8


User provided reference genes

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