Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 0.0e+00 1152.5 585 100.0
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 0.0e+00 1111.7 579 98.1
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.8e-311 1071.2 560 97.5
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.8e-311 1070.5 560 97.7
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 9.1e-307 1056.2 547 98.5
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 1.5e-301 1038.9 559 95.0
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.9e-267 925.6 562 82.7
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.7e-265 919.1 562 82.6
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 4.7e-255 884.4 562 80.6
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.9e-254 880.6 562 80.2
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.6e-249 864.0 562 78.8
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 7.6e-245 850.5 566 77.7
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 1.3e-244 849.7 562 77.2
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 8.4e-244 847.0 567 76.5
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.4e-238 829.7 567 74.6
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 2.9e-236 822.0 545 76.9
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 1.1e-230 803.5 568 73.4
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 1.1e-230 803.5 565 73.5
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 1.4e-227 793.1 544 74.1
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.9e-227 792.7 566 72.3
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 5.5e-227 791.2 567 71.4
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 1.2e-226 790.0 555 73.5
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 7.9e-226 787.3 551 73.5
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.0e-225 786.9 567 72.1
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 6.7e-225 784.3 555 73.2
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 8.7e-225 783.9 556 72.3
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 1.3e-223 780.0 565 71.3
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.3e-223 780.0 549 72.9
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 2.2e-223 779.2 567 70.7
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 5.9e-221 771.2 558 71.5
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 8.5e-220 767.3 499 77.2
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.4e-219 766.5 553 72.3
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 1.4e-219 766.5 568 70.4
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 7.2e-219 764.2 553 72.3
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 6.1e-218 761.1 567 70.4
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.0e-217 760.4 553 72.0
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 1.8e-217 759.6 570 70.0
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 3.0e-217 758.8 543 71.3
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 5.1e-217 758.1 570 69.6
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.3e-216 755.0 535 72.5
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 5.7e-216 754.6 535 72.7
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 7.4e-216 754.2 566 69.4
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 3.7e-215 751.9 567 68.6
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 6.3e-215 751.1 561 70.1
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 8.2e-215 750.7 499 76.4
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 8.2e-215 750.7 546 70.0
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 8.2e-215 750.7 428 86.9
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 1.8e-214 749.6 567 68.1
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 1.2e-213 746.9 500 75.2
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 4.5e-213 745.0 570 68.9
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 4.5e-213 745.0 554 69.1
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 7.7e-213 744.2 505 74.3
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.9e-211 739.6 558 69.2
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.9e-211 739.6 555 68.6
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 5.5e-211 738.0 533 70.7
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 1.4e-209 733.4 571 67.6
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.4e-209 733.4 571 67.1
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.5e-208 729.9 558 66.8
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 4.4e-208 728.4 554 68.4
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 1.3e-207 726.9 560 67.7
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 2.8e-207 725.7 560 68.9
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 3.7e-207 725.3 558 67.2
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 2.4e-206 722.6 490 73.3
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.0e-205 719.5 563 66.1
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 4.5e-205 718.4 558 66.8
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.0e-204 717.2 504 72.6
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 2.2e-204 716.1 556 66.9
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 5.0e-204 714.9 504 72.2
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 8.5e-204 714.1 535 70.3
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 8.5e-204 714.1 556 66.5
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.5e-203 712.6 567 66.3
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 6.1e-202 708.0 564 66.3
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.1e-202 708.0 504 71.8
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.8e-201 706.4 564 64.7
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 5.2e-201 704.9 577 64.5
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 6.7e-201 704.5 507 70.0
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 1.1e-200 703.7 568 65.3
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 5.7e-200 701.4 564 66.5
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 7.4e-200 701.0 501 70.9
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 2.2e-199 699.5 539 67.2
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.7e-199 698.7 568 65.7
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.3e-199 698.0 502 71.1
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 3.1e-198 695.7 549 66.3
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 4.5e-197 691.8 561 64.5
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 7.7e-197 691.0 564 66.1
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 1.3e-196 690.3 568 64.3
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.3e-196 690.3 514 67.9
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.5e-195 686.8 506 69.8
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.2e-195 685.6 519 69.0
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 7.2e-195 684.5 565 64.6
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.2e-194 683.7 523 67.9
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.6e-194 683.3 573 64.7
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 6.1e-194 681.4 543 66.7
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.4e-193 680.2 544 66.0
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 5.2e-193 678.3 569 64.9
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.2e-192 677.2 528 66.5
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 2.6e-192 676.0 501 69.5
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 1.3e-191 673.7 522 68.4
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.3e-191 673.7 569 64.1
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 2.8e-191 672.5 499 69.1
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 2.8e-191 672.5 556 64.4
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 1.6e-189 666.8 508 68.7
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 2.0e-189 666.4 535 66.4
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 1.7e-188 663.3 513 66.1
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 3.8e-188 662.1 571 63.7
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.2e-187 659.1 556 62.9
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 1.6e-186 656.8 567 60.5
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 8.0e-186 654.4 502 65.5
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 1.7e-183 646.7 423 76.4
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.4e-182 643.7 518 65.3
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 5.4e-182 641.7 552 61.4
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 4.1e-174 615.5 503 62.4
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 2.1e-170 603.2 514 60.9
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 4.7e-170 602.1 509 61.7
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 7.5e-168 594.7 568 54.8
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 1.7e-167 593.6 351 82.3
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 1.5e-163 580.5 538 59.3
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 2.5e-163 579.7 501 65.1
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.1e-158 564.3 444 64.4
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 9.5e-155 551.2 384 70.3
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.3e-140 504.2 528 50.8
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 5.1e-140 502.3 511 51.9
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.2e-138 497.7 547 52.8
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.3e-132 477.6 445 58.0
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 9.9e-128 461.5 529 48.8
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 3.1e-121 439.9 258 81.4
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 8.4e-119 431.8 535 43.9
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 1.9e-115 420.6 447 49.9
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 2.9e-111 406.8 479 52.6
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.2e-110 403.3 496 49.2
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.4e-105 387.1 515 46.2
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 6.7e-92 342.4 479 42.0
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 6.3e-90 335.9 300 63.0
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.0e-87 328.6 306 53.3
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 3.9e-84 316.6 382 50.8
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 3.5e-72 276.9 453 37.7
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 4.0e-68 263.5 328 42.1
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 3.4e-67 260.4 243 60.5
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.0e-63 248.8 565 34.7
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 3.9e-39 167.2 167 56.9
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 1.1e-38 165.6 239 45.6
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.5e-30 138.7 534 22.8
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.4e-17 95.5 91 62.6
RcHm_v2.0_Chr7g0205881 Rosa chinensis HOM05D005019 ORTHO05D347162 2.1e-13 81.6 75 60.0
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 5.8e-11 73.6 54 72.2
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 3.8e-10 70.9 63 57.1


User provided reference genes

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