Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1933.7 989 100.0
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1906.7 989 98.3
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1906.3 989 98.0
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1894.8 989 97.8
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1832.0 990 93.7
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1681.8 990 84.6
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1634.0 990 82.8
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1615.9 987 81.9
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1521.1 987 76.4
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1513.0 987 75.7
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1510.0 987 76.5
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1505.7 987 75.6
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1503.8 989 75.9
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1491.5 986 76.0
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1482.2 986 75.5
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1481.1 988 74.5
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1480.7 987 74.8
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1475.3 987 73.7
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1475.3 955 75.7
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1471.1 987 72.5
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1468.4 985 74.3
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1466.1 987 73.3
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1464.9 986 73.4
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1463.0 987 73.6
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1463.0 987 72.9
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1460.3 994 72.7
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1458.4 985 71.5
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1458.4 986 72.7
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1458.0 987 72.3
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1457.2 987 72.6
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1456.0 984 72.6
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1454.9 985 71.3
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1453.3 985 71.8
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1448.3 985 71.7
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1446.4 987 71.7
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1445.3 986 73.3
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1443.3 986 71.9
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1443.3 987 71.4
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1442.2 988 71.8
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1440.2 987 72.7
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1436.4 986 72.3
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1436.0 987 71.7
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1434.9 985 71.1
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1434.9 985 71.4
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1432.2 987 71.5
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1431.4 992 72.1
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1427.9 987 70.5
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1427.5 988 70.4
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1427.5 1010 70.8
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1427.2 987 71.3
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1424.5 987 70.7
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1423.3 985 71.1
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1422.1 992 72.1
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1422.1 985 71.1
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1414.4 990 71.3
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1409.0 985 70.5
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1406.0 980 71.3
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1404.8 987 69.8
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 989 70.1
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1402.1 987 69.6
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1399.4 979 70.5
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1394.8 985 69.4
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1394.8 987 69.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1393.6 987 69.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1392.9 1007 69.4
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1388.2 987 68.4
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1383.2 986 69.6
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1381.3 987 69.5
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1380.9 986 68.4
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1379.0 985 69.0
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1379.0 990 69.0
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1378.2 987 68.7
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1377.5 987 68.2
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1377.5 986 69.5
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1376.3 990 68.8
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 986 68.3
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 985 68.1
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1370.5 985 68.1
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 1000 67.5
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1368.6 985 68.1
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1367.8 985 68.0
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1367.1 986 68.0
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1366.3 1083 64.7
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1366.3 956 69.7
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1365.5 986 68.1
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1364.7 984 69.0
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1364.4 988 67.7
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1364.0 988 68.3
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1362.8 988 68.0
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1362.4 985 67.8
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1362.4 985 67.6
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 985 67.9
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1360.9 988 68.0
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1359.0 994 67.5
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1355.1 987 67.5
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1355.1 1006 66.6
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1354.0 987 67.5
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1354.0 988 67.6
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1353.6 986 68.3
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1349.7 989 68.1
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1340.1 1017 65.6
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1339.3 1082 62.7
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1336.6 954 68.7
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1334.3 1013 65.6
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1329.7 901 73.6
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1326.2 991 66.2
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1319.3 987 66.4
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1318.5 987 66.2
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1309.7 1002 65.4
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1293.5 985 65.0
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1272.7 969 66.2
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1266.9 987 63.9
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1266.5 979 63.7
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1255.0 987 63.9
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1254.6 985 64.6
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1229.5 898 68.0
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1229.2 848 70.6
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1226.8 983 62.3
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1221.8 992 61.6
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1215.7 1016 61.3
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1211.4 992 61.7
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1135.2 849 65.0
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1121.7 882 63.8
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1085.5 954 57.9
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 3.9e-310 1068.1 810 65.1
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.2e-289 999.2 995 51.3
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.8e-286 989.6 1001 51.4
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 1.3e-276 956.8 659 71.3
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.9e-260 901.7 542 81.5
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 2.0e-250 869.8 952 48.5
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.3e-244 850.5 690 60.4
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 8.9e-230 801.2 658 60.9
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 4.6e-210 735.7 530 69.1
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 4.8e-207 725.7 885 42.9
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.1e-190 669.8 809 48.3
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.6e-170 604.4 363 80.2
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.9e-156 557.0 917 39.0
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.9e-147 527.7 420 63.6
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.3e-143 515.0 297 86.9
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 7.8e-141 505.8 297 84.2
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.8e-136 489.6 282 84.4
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-132 477.6 840 35.2
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.8e-112 409.8 257 78.6
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.4e-110 405.2 1057 29.9
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.5e-107 395.2 337 59.1
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 9.0e-105 386.0 664 40.2
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 3.4e-104 384.0 1017 31.4
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 2.6e-88 331.3 380 46.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 4.3e-83 313.9 319 49.5
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.6e-77 295.4 257 56.4
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 1.3e-76 292.4 359 44.6
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 6.7e-76 290.0 430 38.8
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 8.8e-60 236.5 251 49.8
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 4.5e-56 224.2 145 80.7
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 8.5e-55 219.9 129 82.9
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 9.4e-54 216.5 125 84.8
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.8e-52 212.2 184 57.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 4.4e-51 207.6 141 71.6
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 9.1e-49 199.9 125 80.8
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 8.8e-44 183.3 106 82.1
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 5.9e-40 170.6 203 51.7
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 3.6e-37 161.4 109 68.8
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 8.0e-37 160.2 109 68.8
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 8.0e-37 160.2 109 68.8
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 7.2e-30 137.1 85 80.0
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.6e-27 128.6 341 27.9
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.3e-26 126.3 82 70.7
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.1e-21 109.0 63 82.5
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.0e-20 106.7 121 55.4
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.0e-20 106.7 121 55.4
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.4e-19 101.7 82 58.5
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.4e-17 96.3 62 77.4
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.9e-17 95.9 53 81.1
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 1.9e-17 95.9 70 70.0
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 4.1e-17 94.7 188 35.6
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 7.0e-17 94.0 72 68.1
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 3.5e-16 91.7 199 35.2
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 6.6e-15 87.4 47 78.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.1e-14 86.7 143 39.9
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 9.5e-14 83.6 61 67.2
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 8.9e-12 77.0 61 62.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.0e-11 75.9 61 62.3
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 8.6e-07 60.5 37 78.4


User provided reference genes

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