Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.8e-58 228.4 114 100.0
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.2e-23 112.5 81 72.8
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 3.6e-18 95.1 48 87.5
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 3.6e-18 95.1 48 87.5
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 6.2e-18 94.4 48 85.4
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.2e-18 94.4 48 85.4
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 4.6e-13 78.2 73 53.4
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 3.9e-12 75.1 55 61.8
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 1.1e-11 73.6 53 64.2
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 1.1e-11 73.6 55 61.8
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.5e-11 73.2 56 64.3
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 1.9e-11 72.8 55 61.8
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 1.9e-11 72.8 55 60.0
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 3.3e-11 72.0 56 62.5
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 4.3e-11 71.6 45 71.1
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 4.3e-11 71.6 45 71.1
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 4.3e-11 71.6 45 71.1
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 4.3e-11 71.6 74 47.3
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 5.6e-11 71.2 47 68.1
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 5.6e-11 71.2 91 42.9
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 7.4e-11 70.9 47 68.1
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 7.4e-11 70.9 59 54.2
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 7.4e-11 70.9 59 54.2
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 9.6e-11 70.5 52 63.5
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 9.6e-11 70.5 79 46.8
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 1.3e-10 70.1 43 67.4
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 1.3e-10 70.1 45 66.7
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 1.6e-10 69.7 50 66.0
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 1.6e-10 69.7 57 57.9
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 1.6e-10 69.7 59 59.3
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 2.1e-10 69.3 92 40.2
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 2.8e-10 68.9 84 44.0
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 2.8e-10 68.9 74 44.6
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 2.8e-10 68.9 42 64.3
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 2.8e-10 68.9 52 59.6
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 3.6e-10 68.6 56 57.1
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 3.6e-10 68.6 56 57.1
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 3.6e-10 68.6 62 54.8
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 4.8e-10 68.2 42 66.7
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 4.8e-10 68.2 54 57.4
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 6.2e-10 67.8 48 58.3
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 6.2e-10 67.8 49 63.3
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 8.1e-10 67.4 50 58.0
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 8.1e-10 67.4 45 62.2
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 8.1e-10 67.4 53 64.2
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.1e-09 67.0 54 59.3
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.1e-09 67.0 39 69.2
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 1.1e-09 67.0 66 54.5
FAN28G1940 Fragaria x ananassa HOM05D000899 ORTHO05D000710 1.4e-09 66.6 35 82.9
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.4e-09 66.6 86 41.9
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 1.4e-09 66.6 45 62.2
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.8e-09 66.2 53 62.3
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 1.8e-09 66.2 45 64.4
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 1.8e-09 66.2 52 57.7
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 2.4e-09 65.9 52 59.6
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 2.4e-09 65.9 55 54.5
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 2.4e-09 65.9 93 43.0
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 2.4e-09 65.9 57 54.4
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 2.4e-09 65.9 68 50.0
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 3.1e-09 65.5 41 65.9
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 3.1e-09 65.5 51 64.7
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 4.0e-09 65.1 53 60.4
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 4.0e-09 65.1 60 51.7
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 4.0e-09 65.1 49 67.3
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 4.0e-09 65.1 56 57.1
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 4.0e-09 65.1 68 48.5
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 4.0e-09 65.1 39 71.8
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 5.3e-09 64.7 44 63.6
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 5.3e-09 64.7 44 63.6
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 5.3e-09 64.7 78 47.4
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 5.3e-09 64.7 59 59.3
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 5.3e-09 64.7 43 65.1
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 6.9e-09 64.3 41 65.9
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 6.9e-09 64.3 34 79.4
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 9.0e-09 63.9 57 54.4
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 9.0e-09 63.9 83 44.6
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 9.0e-09 63.9 56 57.1
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 9.0e-09 63.9 90 42.2
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 1.2e-08 63.5 39 69.2
FvH4_1g15051 Fragaria vesca HOM05D000899 ORTHO05D197287 1.2e-08 63.5 32 87.5
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 1.2e-08 63.5 89 40.4
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.2e-08 63.5 46 63.0
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.5e-08 63.2 97 40.2
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 1.5e-08 63.2 42 69.0
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 1.5e-08 63.2 55 56.4
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 2.0e-08 62.8 46 58.7
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.0e-08 62.8 57 52.6
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 2.6e-08 62.4 66 50.0
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 3.4e-08 62.0 38 68.4
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 3.4e-08 62.0 93 41.9
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 3.4e-08 62.0 65 46.2
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 4.5e-08 61.6 55 52.7
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 5.8e-08 61.2 36 66.7
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 5.8e-08 61.2 43 62.8
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 7.6e-08 60.8 36 69.4
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 7.6e-08 60.8 49 57.1
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 7.6e-08 60.8 48 54.2
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 9.9e-08 60.5 52 55.8
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 1.3e-07 60.1 39 66.7
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.3e-07 60.1 45 57.8
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.3e-07 60.1 95 41.1
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 1.3e-07 60.1 53 54.7
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 2.2e-07 59.3 38 65.8
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 2.2e-07 59.3 68 45.6
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 3.8e-07 58.5 55 50.9
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 4.9e-07 58.2 52 65.4
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 6.4e-07 57.8 54 48.1
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 1.1e-06 57.0 48 58.3
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 3.2e-06 55.5 40 57.5
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.2e-06 55.1 38 57.9
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 5.5e-06 54.7 40 55.0
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 5.5e-06 54.7 44 56.8
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 7.1e-06 54.3 37 64.9


User provided reference genes

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