Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.9e-107 392.1 228 100.0
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 1.6e-89 333.2 228 89.0
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.6e-89 333.2 228 89.0
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.0e-80 303.9 229 84.3
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 1.1e-77 293.9 176 83.5
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 1.9e-74 283.1 228 76.8
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 3.1e-69 265.8 184 73.9
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 2.9e-67 259.2 227 72.7
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 2.2e-62 243.0 182 69.2
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 2.8e-62 242.7 191 67.0
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 8.2e-62 241.1 185 68.6
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 1.1e-61 240.7 185 67.6
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.4e-61 239.6 180 68.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 2.4e-61 239.6 185 67.6
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 2.4e-61 239.6 179 68.2
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 4.1e-61 238.8 185 67.6
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 9.1e-61 237.7 179 67.6
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 9.1e-61 237.7 179 67.6
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 1.2e-60 237.3 179 67.6
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.2e-60 237.3 150 76.0
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.5e-60 236.9 160 74.4
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 2.6e-60 236.1 185 66.5
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 3.5e-60 235.7 186 66.1
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 4.5e-60 235.3 176 67.6
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 4.5e-60 235.3 187 65.2
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 5.9e-60 235.0 152 75.7
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 5.9e-60 235.0 173 69.4
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 7.7e-60 234.6 185 63.8
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 7.7e-60 234.6 185 64.9
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 1.0e-59 234.2 187 66.8
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.3e-59 233.8 187 65.2
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.3e-59 233.8 127 88.2
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 2.2e-59 233.0 185 65.9
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 2.2e-59 233.0 186 62.9
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 3.8e-59 232.3 176 67.6
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 3.8e-59 232.3 185 63.8
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 3.8e-59 232.3 185 63.8
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 3.8e-59 232.3 194 64.4
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 6.5e-59 231.5 185 65.4
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 8.5e-59 231.1 184 66.3
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.1e-58 230.7 151 74.2
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 1.1e-58 230.7 185 62.7
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 2.5e-58 229.6 181 69.1
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 3.2e-58 229.2 152 75.0
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 3.2e-58 229.2 185 63.2
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 4.2e-58 228.8 187 63.6
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 4.2e-58 228.8 184 65.8
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 7.2e-58 228.0 164 70.7
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 2.1e-57 226.5 185 63.8
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 2.7e-57 226.1 197 60.9
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 3.6e-57 225.7 161 68.9
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 4.7e-57 225.3 176 65.9
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 8.0e-57 224.6 180 65.6
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.0e-56 224.2 185 61.6
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 1.8e-56 223.4 169 69.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 2.3e-56 223.0 180 63.9
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 3.9e-56 222.2 186 63.4
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 3.9e-56 222.2 185 61.6
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 8.8e-56 221.1 176 67.0
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.1e-55 220.7 185 63.2
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 2.6e-55 219.5 128 80.5
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 2.6e-55 219.5 172 67.4
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 4.4e-55 218.8 180 65.0
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 7.4e-55 218.0 176 64.8
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 7.4e-55 218.0 161 68.3
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 9.7e-55 217.6 137 77.4
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 1.7e-54 216.9 191 60.2
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 1.7e-54 216.9 191 60.2
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 1.7e-54 216.9 185 62.2
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 2.2e-54 216.5 185 63.8
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 2.2e-54 216.5 161 67.7
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 3.7e-54 215.7 148 70.9
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 3.7e-54 215.7 127 78.7
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 6.3e-54 214.9 184 60.9
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 6.3e-54 214.9 184 60.9
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 3.1e-53 212.6 184 59.8
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 4.1e-53 212.2 179 59.2
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 4.1e-53 212.2 179 59.2
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 9.1e-53 211.1 185 57.8
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 9.1e-53 211.1 165 65.5
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.2e-52 210.7 152 69.7
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 1.6e-52 210.3 180 61.1
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 2.6e-52 209.5 128 78.1
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 2.6e-52 209.5 127 78.7
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 5.5e-50 201.8 155 67.1
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 7.2e-50 201.4 185 58.9
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 4.0e-48 195.7 192 54.7
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 8.8e-48 194.5 248 48.4
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 8.3e-46 188.0 134 69.4
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 3.8e-43 179.1 127 70.1
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 2.7e-41 172.9 128 63.3
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 6.1e-41 171.8 170 54.7
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 8.8e-40 167.9 91 83.5
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 4.4e-39 165.6 168 51.8
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 2.4e-37 159.8 97 74.2
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 1.5e-34 150.6 141 60.3
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 4.4e-31 139.0 144 59.0
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.3e-30 137.5 126 61.9
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.0e-27 127.9 187 44.9
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 2.3e-27 126.7 185 42.7
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 8.6e-27 124.8 127 53.5
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 3.1e-24 116.3 122 51.6
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 2.4e-21 106.7 66 83.3
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 2.4e-21 106.7 66 83.3
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 8.6e-19 98.2 113 44.2
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.8e-17 93.2 66 72.7
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.5e-15 87.4 74 64.9
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 2.6e-15 86.7 74 64.9
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 1.1e-13 81.3 97 54.6
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 7.3e-10 68.6 48 68.8
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 9.5e-10 68.2 31 87.1
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 8.1e-09 65.1 31 83.9
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 2.3e-08 63.5 37 83.8
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 4.4e-07 59.3 79 50.6
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 2.9e-06 56.6 25 88.0


User provided reference genes

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