Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0829 Fragaria x ananassa HOM05D000168 ORTHO05D208627 3.9e-21 105.1 126 100.0
Cpa.g.sc106.78 Carica papaya HOM05D000168 ORTHO05D001118 6.0e-14 81.3 123 87.0
FvH4_2g03940 Fragaria vesca HOM05D000168 ORTHO05D001118 1.1e-12 77.0 34 100.0
FAN20G3182 Fragaria x ananassa HOM05D000168 ORTHO05D001118 1.1e-12 77.0 34 100.0
FAN24G3510 Fragaria x ananassa HOM05D000168 ORTHO05D001118 1.1e-12 77.0 34 100.0
RcHm_v2.0_Chr6g0252991 Rosa chinensis HOM05D000168 ORTHO05D001118 1.1e-12 77.0 34 100.0
ClCG02G006700 Citrullus lanatus HOM05D000168 ORTHO05D001118 5.6e-12 74.7 34 94.1
Cfa004651 Carpinus fangiana HOM05D000168 ORTHO05D001118 1.6e-11 73.2 34 94.1
Peaxi162Scf00016g02740 Petunia axillaris HOM05D000168 ORTHO05D001118 2.1e-11 72.8 122 84.4
Prupe.8G140900 Prunus persica HOM05D000168 ORTHO05D001118 2.1e-11 72.8 34 91.2
QL11p031937 Quercus lobata HOM05D000168 ORTHO05D001118 2.8e-11 72.4 33 90.9
Haze_10249 Corylus avellana HOM05D000168 ORTHO05D001118 3.6e-11 72.0 34 91.2
MELO3C018510.2 Cucumis melo HOM05D000168 ORTHO05D001118 4.8e-11 71.6 34 91.2
CiPaw.05G015500 Carya illinoinensis HOM05D000168 ORTHO05D001118 6.2e-11 71.2 34 88.2
Eucgr.I01078 Eucalyptus grandis HOM05D000168 ORTHO05D001118 6.2e-11 71.2 34 88.2
CsaV3_7G007930 Cucumis sativus L. HOM05D000168 ORTHO05D001118 8.1e-11 70.9 34 88.2
Sed0021525 Sechium edule HOM05D000168 ORTHO05D001118 8.1e-11 70.9 34 88.2
CiPaw.06G167400 Carya illinoinensis HOM05D000168 ORTHO05D001118 1.8e-10 69.7 34 85.3
Dinv15789 Davidia involucrata HOM05D000168 ORTHO05D001118 1.8e-10 69.7 34 88.2
MSTRG.5331 Avicennia marina HOM05D000168 ORTHO05D001118 2.4e-10 69.3 34 85.3
Ciclev10029281m.g Citrus clementina HOM05D000168 ORTHO05D001118 2.4e-10 69.3 34 85.3
Manes.10G057848 Manihot esculenta HOM05D000168 ORTHO05D001118 2.4e-10 69.3 34 85.3
GSVIVG01037864001 Vitis vinifera HOM05D000168 ORTHO05D001118 2.4e-10 69.3 34 85.3
CANSAT25G1015 Cannabis sativa HOM05D000168 ORTHO05D001118 4.0e-10 68.6 34 85.3
Potri.001G296500 Populus trichocarpa HOM05D000168 ORTHO05D001118 4.0e-10 68.6 34 82.4
Lj5A217G89 Lonicera japonica HOM05D000168 ORTHO05D001118 5.3e-10 68.2 34 85.3
Atru.chr5.2410 Acer truncatum HOM05D000168 ORTHO05D001118 6.9e-10 67.8 34 82.4
Actinidia34371 Actinidia chinensis HOM05D000168 ORTHO05D001118 6.9e-10 67.8 34 82.4
ECA236G3630 Erigeron canadensis HOM05D000168 ORTHO05D001118 6.9e-10 67.8 34 85.3
THA.LOC104807225 Tarenaya hassleriana HOM05D000168 ORTHO05D001118 6.9e-10 67.8 34 82.4
Potri.009G090700 Populus trichocarpa HOM05D000168 ORTHO05D001118 9.0e-10 67.4 34 82.4
Migut.B00422 Erythranthe guttata HOM05D000168 ORTHO05D001118 1.2e-09 67.0 34 79.4
Lj5g0014735 Lotus japonicus HOM05D000168 ORTHO05D001118 1.2e-09 67.0 34 85.3
Oeu011144.1 Olea europaea HOM05D000168 ORTHO05D001118 1.2e-09 67.0 34 79.4
HanXRQChr04g0128571 Helianthus annuus HOM05D000168 ORTHO05D001118 1.5e-09 66.6 34 82.4
TWI59G0619 Tripterygium wilfordii HOM05D000168 ORTHO05D001118 1.5e-09 66.6 34 82.4
MSTRG.20208 Avicennia marina HOM05D000168 ORTHO05D001118 2.0e-09 66.2 34 82.4
Os03g0440900 Oryza sativa ssp. japonica HOM05D000168 ORTHO05D001118 2.0e-09 66.2 35 85.7
arahy.Tifrunner.gnm1.ann1.UJE6LN Arachis hypogaea HOM05D000168 ORTHO05D001118 2.6e-09 65.9 34 82.4
arahy.Tifrunner.gnm1.ann1.Y08NEP Arachis hypogaea HOM05D000168 ORTHO05D001118 2.6e-09 65.9 34 82.4
CSS0048080 Camellia sinensis var. sinensis HOM05D000168 ORTHO05D001118 2.6e-09 65.9 34 82.4
Glyma.11G001200 Glycine max HOM05D000168 ORTHO05D001118 2.6e-09 65.9 34 82.4
Manes.07G063900 Manihot esculenta HOM05D000168 ORTHO05D001118 2.6e-09 65.9 35 85.7
SGA_v2.0_scaffold32G13014 Striga asiatica HOM05D000168 ORTHO05D001118 2.6e-09 65.9 34 82.4
RhsimUnG0125800 Rhododendron simsii HOM05D000168 ORTHO05D001118 3.4e-09 65.5 34 82.4
DCAR_021964 Daucus carota HOM05D000168 ORTHO05D001118 5.8e-09 64.7 34 76.5
Dinv42220 Davidia involucrata HOM05D000168 ORTHO05D001118 5.8e-09 64.7 34 79.4
MD10G1102700 Malus domestica HOM05D000168 ORTHO05D001118 5.8e-09 64.7 34 82.4
TAR376G0019 Trochodendron aralioides HOM05D000168 ORTHO05D001118 5.8e-09 64.7 34 76.5
Cc02_g19620 Coffea canephora HOM05D000168 ORTHO05D001118 7.6e-09 64.3 34 76.5
Actinidia00388 Actinidia chinensis HOM05D000168 ORTHO05D001118 9.9e-09 63.9 34 79.4
Aqoxy5G00618 Aquilegia oxysepala HOM05D000168 ORTHO05D001118 9.9e-09 63.9 35 77.1
COL.COLO4_32542 Corchorus olitorius HOM05D000168 ORTHO05D001118 9.9e-09 63.9 35 82.9
Glyma.20G132400 Glycine max HOM05D000168 ORTHO05D001118 9.9e-09 63.9 34 79.4
Lalb_Chr02g0145101 Lupinus albus HOM05D000168 ORTHO05D001118 9.9e-09 63.9 34 76.5
Lalb_Chr06g0165271 Lupinus albus HOM05D000168 ORTHO05D001118 9.9e-09 63.9 34 76.5
Medtr1g106785 Medicago truncatula HOM05D000168 ORTHO05D001118 9.9e-09 63.9 34 79.4
TPR.G27072 Trifolium pratense HOM05D000168 ORTHO05D001118 9.9e-09 63.9 34 79.4
Duzib052G0535 Durio zibethinus HOM05D000168 ORTHO05D001118 1.3e-08 63.5 35 80.0
MD05G1096400 Malus domestica HOM05D000168 ORTHO05D001118 1.3e-08 63.5 34 79.4
Phvul.007G043500 Phaseolus vulgaris HOM05D000168 ORTHO05D001118 1.7e-08 63.2 34 79.4
Duzib132G1193 Durio zibethinus HOM05D000168 ORTHO05D001118 2.9e-08 62.4 35 80.0
Glyma.10G258800 Glycine max HOM05D000168 ORTHO05D001118 2.9e-08 62.4 34 76.5
Lj1g0013133 Lotus japonicus HOM05D000168 ORTHO05D001118 3.8e-08 62.0 34 76.5
Thecc.02G113800 Theobroma cacao HOM05D000168 ORTHO05D001118 3.8e-08 62.0 35 80.0
VMungo0720G0682 Vigna mungo HOM05D000168 ORTHO05D001118 3.8e-08 62.0 34 76.5
CAN.G606.43 Capsicum annuum HOM05D000168 ORTHO05D001118 4.9e-08 61.6 32 75.0
Nitab4.5_0001105g0230 Nicotiana tabacum HOM05D000168 ORTHO05D001118 4.9e-08 61.6 33 72.7
Nitab4.5_0004685g0080 Nicotiana tabacum HOM05D000168 ORTHO05D001118 4.9e-08 61.6 33 72.7
Solyc01g107250.3 Solanum lycopersicum HOM05D000168 ORTHO05D001118 4.9e-08 61.6 32 75.0
Sopen01g049500 Solanum pennellii HOM05D000168 ORTHO05D001118 4.9e-08 61.6 32 75.0
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 4.9e-08 61.6 32 75.0
Ca_11046_v3 Cicer arietinum L. HOM05D000168 ORTHO05D001118 8.4e-08 60.8 34 76.5
Psat6g215760 Pisum sativum HOM05D000168 ORTHO05D001118 8.4e-08 60.8 34 73.5
TPR.G8294 Trifolium pratense HOM05D000168 ORTHO05D001118 8.4e-08 60.8 34 73.5
HPP92_007855 Vanilla planifolia HOM05D000168 ORTHO05D001118 8.4e-08 60.8 34 73.5
Nn1g04616 Nelumbo nucifera HOM05D000168 ORTHO05D001118 1.4e-07 60.1 35 74.3
Medtr5g005170 Medicago truncatula HOM05D000168 ORTHO05D001118 1.9e-07 59.7 34 73.5
PSO541G5042 Papaver somniferum HOM05D000168 ORTHO05D001118 4.2e-07 58.5 35 71.4
PSO675G2410 Papaver somniferum HOM05D000168 ORTHO05D001118 4.2e-07 58.5 35 71.4
Gohir.A12G020300 Gossypium hirsutum HOM05D000168 ORTHO05D001118 5.5e-07 58.2 35 74.3
Gohir.D12G020500 Gossypium hirsutum HOM05D000168 ORTHO05D001118 5.5e-07 58.2 35 74.3
Gorai.008G020900 Gossypium raimondii HOM05D000168 ORTHO05D001118 5.5e-07 58.2 35 74.3
FAN27G1188 Fragaria x ananassa HOM05D000168 ORTHO05D001118 1.6e-06 56.6 76 44.7
Sabra16G0185600 Salix brachista HOM05D000168 ORTHO05D001118 3.5e-06 55.5 57 49.1


User provided reference genes

Program Settings