Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0772 Fragaria x ananassa HOM05D006336 ORTHO05D007819 5.9e-103 377.5 183 100.0
FvH4_2g37050 Fragaria vesca HOM05D006336 ORTHO05D007819 7.2e-85 317.4 158 99.4
FAN27G0198 Fragaria x ananassa HOM05D006336 ORTHO05D007819 8.9e-83 310.5 158 97.5
RcHm_v2.0_Chr6g0304731 Rosa chinensis HOM05D006336 ORTHO05D007819 4.1e-80 301.6 156 94.9
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 3.4e-74 282.0 158 88.6
MD08G1047000 Malus domestica HOM05D006336 ORTHO05D007819 4.9e-73 278.1 158 87.3
Cfa017842 Carpinus fangiana HOM05D006336 ORTHO05D007819 3.1e-67 258.8 158 77.8
CANSAT25G0260 Cannabis sativa HOM05D006336 ORTHO05D007819 4.0e-67 258.5 156 78.8
Ca_13088_v3 Cicer arietinum L. HOM05D006336 ORTHO05D007819 4.0e-67 258.5 158 75.9
TWI32G0525 Tripterygium wilfordii HOM05D006336 ORTHO05D007819 7.5e-66 254.2 158 75.9
Atru.chr7.1812 Acer truncatum HOM05D006336 ORTHO05D007819 4.9e-65 251.5 158 74.1
arahy.Tifrunner.gnm1.ann1.6DI6VD Arachis hypogaea HOM05D006336 ORTHO05D007819 1.1e-64 250.4 158 71.5
Duzib187G1166 Durio zibethinus HOM05D006336 ORTHO05D007819 1.4e-64 250.0 157 75.8
Lalb_Chr24g0393711 Lupinus albus HOM05D006336 ORTHO05D007819 1.9e-64 249.6 158 72.2
Medtr1g014730 Medicago truncatula HOM05D006336 ORTHO05D007819 1.9e-64 249.6 158 72.8
Sabra06G0167900 Salix brachista HOM05D006336 ORTHO05D007819 3.2e-64 248.8 158 73.4
GSVIVG01035507001 Vitis vinifera HOM05D006336 ORTHO05D007819 3.2e-64 248.8 178 67.4
TPR.G38941 Trifolium pratense HOM05D006336 ORTHO05D007819 9.2e-64 247.3 158 71.5
Lj5g0013864 Lotus japonicus HOM05D006336 ORTHO05D007819 1.2e-63 246.9 158 72.2
TAR636G2611 Trochodendron aralioides HOM05D006336 ORTHO05D007819 1.6e-63 246.5 157 73.2
Gohir.D06G080900 Gossypium hirsutum HOM05D006336 ORTHO05D007819 2.7e-63 245.7 157 73.2
Gorai.010G094300 Gossypium raimondii HOM05D006336 ORTHO05D007819 3.5e-63 245.4 157 73.2
Glyma.17G220200 Glycine max HOM05D006336 ORTHO05D007819 4.6e-63 245.0 156 73.1
Potri.006G217700 Populus trichocarpa HOM05D006336 ORTHO05D007819 4.6e-63 245.0 157 72.0
arahy.Tifrunner.gnm1.ann1.YUGK7S Arachis hypogaea HOM05D006336 ORTHO05D007819 6.0e-63 244.6 158 69.6
Dinv09419 Davidia involucrata HOM05D006336 ORTHO05D007819 1.3e-62 243.4 179 65.9
Sed0027870 Sechium edule HOM05D006336 ORTHO05D007819 1.3e-62 243.4 155 71.0
Nn6g35635 Nelumbo nucifera HOM05D006336 ORTHO05D007819 1.7e-62 243.0 153 72.5
VMungo0647G1288 Vigna mungo HOM05D006336 ORTHO05D007819 3.0e-62 242.3 156 72.4
PGR044G0762 Punica granatum HOM05D006336 ORTHO05D007819 3.9e-62 241.9 156 72.4
TAR624G1124 Trochodendron aralioides HOM05D006336 ORTHO05D007819 3.9e-62 241.9 157 70.7
COL.COLO4_21171 Corchorus olitorius HOM05D006336 ORTHO05D007819 6.6e-62 241.1 157 71.3
AUR62021599 Chenopodium quinoa HOM05D006336 ORTHO05D007819 8.6e-62 240.7 158 71.5
Phvul.001G044100 Phaseolus vulgaris HOM05D006336 ORTHO05D007819 8.6e-62 240.7 156 71.8
ClCG05G015960 Citrullus lanatus HOM05D006336 ORTHO05D007819 1.1e-61 240.4 156 71.8
Hma1.2p1_0262F.1_g105216 Hydrangea macrophylla HOM05D006336 ORTHO05D007819 1.5e-61 240.0 156 71.8
EL10Ac5g11099 Beta vulgaris HOM05D006336 ORTHO05D007819 3.3e-61 238.8 156 71.2
Ciclev10009629m.g Citrus clementina HOM05D006336 ORTHO05D007819 4.3e-61 238.4 158 69.6
Cpa.g.sc82.21 Carica papaya HOM05D006336 ORTHO05D007819 5.6e-61 238.0 158 70.9
Gohir.A06G081300 Gossypium hirsutum HOM05D006336 ORTHO05D007819 9.5e-61 237.3 157 72.0
CiPaw.13G138600 Carya illinoinensis HOM05D006336 ORTHO05D007819 1.6e-60 236.5 157 72.0
MELO3C016932.2 Cucumis melo HOM05D006336 ORTHO05D007819 2.1e-60 236.1 155 71.6
Eucgr.C03178 Eucalyptus grandis HOM05D006336 ORTHO05D007819 8.1e-60 234.2 156 71.2
Rhsim03G0050100 Rhododendron simsii HOM05D006336 ORTHO05D007819 1.1e-59 233.8 157 72.0
Lj8C369G2 Lonicera japonica HOM05D006336 ORTHO05D007819 1.8e-59 233.0 157 70.7
CsaV3_4G036230 Cucumis sativus L. HOM05D006336 ORTHO05D007819 2.3e-59 232.6 155 69.7
AL5G21500 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 6.8e-59 231.1 158 66.5
Sc04g0003070 Simmondsia chinensis HOM05D006336 ORTHO05D007819 2.6e-58 229.2 185 59.5
AT3G43540 Arabidopsis thaliana HOM05D006336 ORTHO05D007819 3.4e-58 228.8 158 65.8
CARHR098720 Cardamine hirsuta HOM05D006336 ORTHO05D007819 7.5e-58 227.6 158 64.6
vmacro07660 Vaccinium macrocarpon HOM05D006336 ORTHO05D007819 7.5e-58 227.6 157 69.4
PSO135G0459 Papaver somniferum HOM05D006336 ORTHO05D007819 1.3e-57 226.9 155 67.1
THA.LOC104799597 Tarenaya hassleriana HOM05D006336 ORTHO05D007819 2.2e-57 226.1 156 66.7
BcaC01g02096 Brassica carinata HOM05D006336 ORTHO05D007819 2.9e-57 225.7 158 65.2
A06p22570 Brassica napus HOM05D006336 ORTHO05D007819 2.9e-57 225.7 158 65.2
C03p68560 Brassica napus HOM05D006336 ORTHO05D007819 2.9e-57 225.7 158 65.2
BolC3t19114H Brassica oleracea HOM05D006336 ORTHO05D007819 2.9e-57 225.7 158 65.2
BraA06t25331Z Brassica rapa HOM05D006336 ORTHO05D007819 2.9e-57 225.7 158 65.2
MBI13_g01670_MAGBIO Magnolia biondii HOM05D006336 ORTHO05D007819 3.7e-57 225.3 153 68.6
Carub.0005s0929 Capsella rubella HOM05D006336 ORTHO05D007819 4.9e-57 224.9 158 65.2
Carub.0251s0001 Capsella rubella HOM05D006336 ORTHO05D007819 4.9e-57 224.9 158 65.2
BcaB01g01223 Brassica carinata HOM05D006336 ORTHO05D007819 8.3e-57 224.2 158 64.6
Ah.11g048000 Amaranthus hybridus HOM05D006336 ORTHO05D007819 1.4e-56 223.4 148 70.9
SGA_v2.0_scaffold89G27365 Striga asiatica HOM05D006336 ORTHO05D007819 1.4e-56 223.4 173 61.3
Thhalv10002575m.g Eutrema salsugineum HOM05D006336 ORTHO05D007819 1.9e-56 223.0 158 64.6
Sp5g17620 Schrenkiella parvula HOM05D006336 ORTHO05D007819 1.9e-56 223.0 158 63.9
Oeu047793.1 Olea europaea HOM05D006336 ORTHO05D007819 2.4e-56 222.6 156 66.7
SalBow4G0695 Salvia bowleyana HOM05D006336 ORTHO05D007819 4.1e-56 221.9 177 59.3
Cc08_g04540 Coffea canephora HOM05D006336 ORTHO05D007819 7.1e-56 221.1 157 63.1
HanXRQChr03g0084651 Helianthus annuus HOM05D006336 ORTHO05D007819 9.2e-56 220.7 150 72.0
Nitab4.5_0008763g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 9.2e-56 220.7 157 65.6
CAN.G22.30 Capsicum annuum HOM05D006336 ORTHO05D007819 1.2e-55 220.3 158 65.2
Migut.A00484 Erythranthe guttata HOM05D006336 ORTHO05D007819 1.6e-55 219.9 155 66.5
Lsat_1_v5_gn_6_74301 Lactuca sativa HOM05D006336 ORTHO05D007819 2.7e-55 219.2 157 66.2
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 3.5e-55 218.8 158 65.8
Aa31LG4G13380 Aethionema arabicum HOM05D006336 ORTHO05D007819 6.0e-55 218.0 156 63.5
Cc08_g04580 Coffea canephora HOM05D006336 ORTHO05D007819 1.0e-54 217.2 155 62.6
MSTRG.11848 Avicennia marina HOM05D006336 ORTHO05D007819 1.3e-54 216.9 158 65.2
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 2.3e-54 216.1 158 65.2
Cc08_g04560 Coffea canephora HOM05D006336 ORTHO05D007819 3.0e-54 215.7 155 61.9
Actinidia27818 Actinidia chinensis HOM05D006336 ORTHO05D007819 5.1e-54 214.9 167 65.9
ECA240G3698 Erigeron canadensis HOM05D006336 ORTHO05D007819 6.6e-54 214.5 151 68.9
Hund02606 Selenicereus undatus HOM05D006336 ORTHO05D007819 6.6e-54 214.5 157 64.3
Aqoxy7G04150 Aquilegia oxysepala HOM05D006336 ORTHO05D007819 2.5e-53 212.6 188 55.9
DCAR_002185 Daucus carota HOM05D006336 ORTHO05D007819 2.5e-53 212.6 150 67.3
unitig_32.g10956 Utricularia gibba HOM05D006336 ORTHO05D007819 2.1e-52 209.5 155 63.2
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 1.1e-51 207.2 152 63.8
Cc00_g23060 Coffea canephora HOM05D006336 ORTHO05D007819 2.1e-47 193.0 143 60.1
Cc08_g04510 Coffea canephora HOM05D006336 ORTHO05D007819 3.5e-47 192.2 143 59.4
CDE05G3418 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 3.6e-44 182.2 153 56.2
HPP92_019316 Vanilla planifolia HOM05D006336 ORTHO05D007819 1.4e-43 180.3 129 62.0
Psat6g024200 Pisum sativum HOM05D006336 ORTHO05D007819 3.1e-43 179.1 127 68.5
CSS0028971 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 5.8e-42 174.9 113 75.2
Dinv37442 Davidia involucrata HOM05D006336 ORTHO05D007819 1.2e-39 167.2 112 70.5
Nitab4.5_0008291g0020 Nicotiana tabacum HOM05D006336 ORTHO05D007819 1.9e-37 159.8 159 49.1
Manes.03G055500 Manihot esculenta HOM05D006336 ORTHO05D007819 4.3e-37 158.7 105 70.5
Pp3c1_38250 Physcomitrium patens HOM05D006336 ORTHO05D007819 9.6e-37 157.5 154 50.6
SMO351G0262 Selaginella moellendorffii HOM05D006336 ORTHO05D007819 6.9e-35 151.4 151 47.7
Solyc08g075100.4 Solanum lycopersicum HOM05D006336 ORTHO05D007819 1.2e-34 150.6 107 66.4
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 4.9e-33 145.2 152 47.4
CDE05G3496 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 2.1e-31 139.8 163 47.2
AagrBONN_evm.TU.Sc2ySwM_362.2113 Anthoceros agrestis HOM05D006336 ORTHO05D007819 3.5e-31 139.0 139 44.6
Mapoly0124s0049 Marchantia polymorpha HOM05D006336 ORTHO05D007819 4.8e-28 128.6 178 39.3
Peaxi162Scf00014g01816 Petunia axillaris HOM05D006336 ORTHO05D007819 6.2e-28 128.3 83 68.7
CBR_g30757 Chara braunii HOM05D006336 ORTHO05D007819 1.1e-24 117.5 121 45.5
Ah.01g016210 Amaranthus hybridus HOM05D006336 ORTHO05D007819 1.9e-21 106.7 136 46.3
Cc00_g35650 Coffea canephora HOM05D006336 ORTHO05D007819 9.0e-19 97.8 66 60.6
Cre06.g278264 Chlamydomonas reinhardtii HOM05D006336 ORTHO05D007819 2.6e-18 96.3 122 39.3
Thecc.09G066700 Theobroma cacao HOM05D006336 ORTHO05D007819 8.7e-14 81.3 59 62.7
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 5.7e-13 78.6 102 45.1
PGSC0003DMG400020816 Solanum tuberosum HOM05D006336 ORTHO05D007819 8.2e-12 74.7 54 63.0
Medtr8g070480 Medicago truncatula HOM05D005986 ORTHO05D007467 6.5e-09 65.1 123 32.5
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 2.5e-08 63.2 123 33.3
Lalb_Chr16g0391881 Lupinus albus HOM05D005986 ORTHO05D007467 1.6e-07 60.5 104 36.5
MCO06G181 Micromonas commoda HOM05D005986 ORTHO05D007467 3.6e-07 59.3 103 35.0
Lj4g0000342 Lotus japonicus HOM05D005986 ORTHO05D007467 4.6e-07 58.9 123 32.5
ClCG10G013170 Citrullus lanatus HOM05D005986 ORTHO05D007467 1.8e-06 57.0 86 39.5
TPR.G6140 Trifolium pratense HOM05D005986 ORTHO05D007467 1.8e-06 57.0 122 31.1
CARHR184430 Cardamine hirsuta HOM05D005986 ORTHO05D007467 2.3e-06 56.6 81 37.0
Sed0000271 Sechium edule HOM05D005986 ORTHO05D007467 3.0e-06 56.2 86 38.4
Sc11g0000020 Simmondsia chinensis HOM05D005986 ORTHO05D007467 3.9e-06 55.8 87 36.8


User provided reference genes

Program Settings