Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0771 Fragaria x ananassa HOM05D008017 ORTHO05D009829 4.2e-153 544.7 274 100.0
FAN27G1723 Fragaria x ananassa HOM05D008017 ORTHO05D009829 1.9e-145 519.2 296 90.5
FAN20G2511 Fragaria x ananassa HOM05D008017 ORTHO05D009829 2.5e-145 518.8 296 90.5
FvH4_2g23820 Fragaria vesca HOM05D008017 ORTHO05D009829 2.1e-144 515.8 296 89.9
FAN24G0680 Fragaria x ananassa HOM05D008017 ORTHO05D009829 9.1e-132 473.8 306 80.4
RcHm_v2.0_Chr6g0291401 Rosa chinensis HOM05D008017 ORTHO05D009829 3.2e-113 412.1 302 73.5
Prupe.8G243500 Prunus persica HOM05D008017 ORTHO05D009829 4.6e-59 232.3 325 45.5
MD03G1267700 Malus domestica HOM05D008017 ORTHO05D009829 3.0e-58 229.6 319 44.2
Haze_04733 Corylus avellana HOM05D008017 ORTHO05D009829 4.0e-47 192.6 324 39.5
CiPaw.08G104100 Carya illinoinensis HOM05D008017 ORTHO05D009829 9.9e-46 188.0 330 38.8
GSVIVG01011109001 Vitis vinifera HOM05D008017 ORTHO05D009829 2.2e-45 186.8 344 36.6
Cfa006117 Carpinus fangiana HOM05D008017 ORTHO05D009829 3.8e-45 186.0 325 38.2
QL12p022298 Quercus lobata HOM05D008017 ORTHO05D009829 4.6e-43 179.1 323 38.4
Duzib133G1520 Durio zibethinus HOM05D008017 ORTHO05D009829 1.2e-38 164.5 312 36.2
Gohir.A11G121700 Gossypium hirsutum HOM05D008017 ORTHO05D009829 8.4e-37 158.3 326 34.4
Thecc.01G282500 Theobroma cacao HOM05D008017 ORTHO05D009829 2.4e-36 156.8 333 34.5
Gohir.D11G126900 Gossypium hirsutum HOM05D008017 ORTHO05D009829 7.1e-36 155.2 336 34.5
Gorai.007G135600 Gossypium raimondii HOM05D008017 ORTHO05D009829 1.6e-35 154.1 341 34.0
CSS0036401 Camellia sinensis var. sinensis HOM05D008017 ORTHO05D009829 1.9e-33 147.1 313 33.9
TWI59G0151 Tripterygium wilfordii HOM05D008017 ORTHO05D009829 5.6e-33 145.6 345 31.9
Dinv32952 Davidia involucrata HOM05D008017 ORTHO05D009829 1.5e-30 137.5 324 32.4
CsaV3_6G037070 Cucumis sativus L. HOM05D008017 ORTHO05D009829 1.7e-29 134.0 293 34.1
Oeu022877.1 Olea europaea HOM05D008017 ORTHO05D009829 1.1e-28 131.3 293 32.4
vmacro14930 Vaccinium macrocarpon HOM05D008017 ORTHO05D009829 1.4e-28 131.0 304 34.9
Rhsim01G0275500 Rhododendron simsii HOM05D008017 ORTHO05D009829 4.2e-28 129.4 322 31.7
CANSAT25G3665 Cannabis sativa HOM05D008017 ORTHO05D009829 2.1e-27 127.1 322 35.4
ClCG07G000190 Citrullus lanatus HOM05D008017 ORTHO05D009829 7.9e-27 125.2 343 30.9
COL.COLO4_09129 Corchorus olitorius HOM05D008017 ORTHO05D009829 1.3e-26 124.4 278 35.3
Cpa.g.sc52.7 Carica papaya HOM05D008017 ORTHO05D009829 1.8e-26 124.0 312 32.7
Hma1.2p1_0257F.1_g103690 Hydrangea macrophylla HOM05D008017 ORTHO05D009829 1.5e-25 120.9 149 45.0
Lalb_Chr01g0020201 Lupinus albus HOM05D008017 ORTHO05D009829 1.1e-23 114.8 314 33.8
Lj5g0002267 Lotus japonicus HOM05D008017 ORTHO05D009829 1.8e-23 114.0 336 31.8
Lj2A1176T49 Lonicera japonica HOM05D008017 ORTHO05D009829 4.1e-23 112.8 293 31.7
Phvul.007G170200 Phaseolus vulgaris HOM05D008017 ORTHO05D009829 5.3e-23 112.5 324 30.6
Cc01_g19690 Coffea canephora HOM05D008017 ORTHO05D009829 2.0e-22 110.5 199 37.2
Ca_09767_v3 Cicer arietinum L. HOM05D008017 ORTHO05D009829 2.6e-22 110.2 270 33.0
VMungo0720G1670 Vigna mungo HOM05D008017 ORTHO05D009829 4.5e-22 109.4 324 29.3
Glyma.02G148500 Glycine max HOM05D008017 ORTHO05D009829 1.3e-21 107.8 322 32.0
arahy.Tifrunner.gnm1.ann1.2M7N28 Arachis hypogaea HOM05D008017 ORTHO05D009829 2.9e-21 106.7 297 32.0
MELO3C014408.2 Cucumis melo HOM05D008017 ORTHO05D009829 3.8e-21 106.3 347 28.2
arahy.Tifrunner.gnm1.ann1.D318AT Arachis hypogaea HOM05D008017 ORTHO05D009829 5.0e-21 105.9 292 31.5
Medtr1g072530 Medicago truncatula HOM05D008017 ORTHO05D009829 9.3e-20 101.7 325 30.2
Atru.chr5.1386 Acer truncatum HOM05D008017 ORTHO05D009829 6.7e-18 95.5 222 34.2
Ciclev10023515m.g Citrus clementina HOM05D008017 ORTHO05D009829 1.5e-17 94.4 321 27.7
MSTRG.18221 Avicennia marina HOM05D008017 ORTHO05D009829 1.9e-17 94.0 299 28.8
Nn4g26194 Nelumbo nucifera HOM05D001048 ORTHO05D009829 3.3e-17 93.2 154 36.4
Nn4g26195 Nelumbo nucifera HOM05D001048 ORTHO05D009829 3.3e-17 93.2 154 36.4
Nitab4.5_0002386g0070 Nicotiana tabacum HOM05D008017 ORTHO05D009829 5.7e-17 92.4 222 29.7
Migut.D00274 Erythranthe guttata HOM05D008017 ORTHO05D009829 1.3e-16 91.3 305 28.5
PGSC0003DMG400000958 Solanum tuberosum HOM05D008017 ORTHO05D009829 1.4e-15 87.8 126 41.3
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 2.4e-15 87.0 271 29.5
AUR62039903 Chenopodium quinoa HOM05D008017 ORTHO05D009829 3.1e-15 86.7 126 38.9
Aqoxy2G03270 Aquilegia oxysepala HOM05D001048 ORTHO05D009829 4.1e-15 86.3 124 41.1
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 4.1e-15 86.3 117 41.0
Actinidia24882 Actinidia chinensis HOM05D008017 ORTHO05D009829 6.9e-15 85.5 64 62.5
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 1.2e-14 84.7 117 40.2
THA.LOC104801223 Tarenaya hassleriana HOM05D008017 ORTHO05D009829 1.2e-14 84.7 125 39.2
Solyc09g064920.3 Solanum lycopersicum HOM05D008017 ORTHO05D009829 2.0e-14 84.0 122 39.3
AUR62036801 Chenopodium quinoa HOM05D008017 ORTHO05D009829 2.6e-14 83.6 126 37.3
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 7.7e-14 82.0 182 33.5
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 7.7e-14 82.0 182 33.5
Psat6g060800 Pisum sativum HOM05D008017 ORTHO05D009829 7.7e-14 82.0 121 40.5
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 5.0e-13 79.3 112 41.1
Nitab4.5_0001028g0180 Nicotiana tabacum HOM05D008017 ORTHO05D009829 1.1e-12 78.2 139 36.7
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 1.9e-12 77.4 265 30.2
arahy.Tifrunner.gnm1.ann1.UF2TDU Arachis hypogaea HOM05D008017 ORTHO05D009829 3.2e-12 76.6 149 40.3
Ah.15g091760 Amaranthus hybridus HOM05D003123 ORTHO05D003492 5.5e-12 75.9 93 41.9
TPR.G1572 Trifolium pratense HOM05D008017 ORTHO05D009829 9.4e-12 75.1 110 40.9
unitig_22.g5255 Utricularia gibba HOM05D008017 ORTHO05D009829 1.2e-11 74.7 68 48.5
Aa31LG5G2480 Aethionema arabicum HOM05D008017 ORTHO05D009829 2.7e-11 73.6 120 39.2
arahy.Tifrunner.gnm1.ann1.3EF69T Arachis hypogaea HOM05D008068 ORTHO05D009829 2.7e-11 73.6 78 52.6
TAR633G0828 Trochodendron aralioides HOM05D008017 ORTHO05D009829 3.6e-11 73.2 54 63.0
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 6.1e-11 72.4 272 28.3
Lsat_1_v5_gn_9_4200 Lactuca sativa HOM05D055571 ORTHO05D009829 1.8e-10 70.9 125 37.6
Thhalv10028830m.g Eutrema salsugineum HOM05D008017 ORTHO05D009829 2.3e-10 70.5 127 37.0
PSO170G5150 Papaver somniferum HOM05D001048 ORTHO05D009829 3.0e-10 70.1 144 35.4
HanXRQChr10g0282841 Helianthus annuus HOM05D008017 ORTHO05D009829 3.7e-08 63.2 242 25.2
ATR0626G011 Amborella trichopoda HOM05D001048 ORTHO05D009829 1.4e-07 61.2 124 31.5
VMungo1383G2424 Vigna mungo HOM05D008017 ORTHO05D009829 3.1e-07 60.1 102 37.3
Duzib133G1362 Durio zibethinus HOM05D001048 ORTHO05D000069 9.1e-07 58.5 133 33.8
SGA_v2.0_scaffold1G00455 Striga asiatica HOM05D008017 ORTHO05D009829 2.0e-06 57.4 125 28.0
Actinidia21104 Actinidia chinensis HOM05D001048 ORTHO05D009829 5.9e-06 55.8 156 30.1
Migut.K00336 Erythranthe guttata HOM05D001048 ORTHO05D000069 5.9e-06 55.8 155 32.3
TAR362G0965 Trochodendron aralioides HOM05D001048 ORTHO05D009829 5.9e-06 55.8 63 50.8
Peaxi162Scf00570g00051 Petunia axillaris HOM05D008017 ORTHO05D009829 7.7e-06 55.5 269 25.7


User provided reference genes

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