Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0770 Fragaria x ananassa HOM05D000955 ORTHO05D003340 1.0e-34 149.8 96 100.0
FvH4_2g34550 Fragaria vesca HOM05D000955 ORTHO05D003340 1.4e-34 149.4 96 99.0
FAN20G1846 Fragaria x ananassa HOM05D000955 ORTHO05D003340 4.4e-33 144.4 96 91.7
RcHm_v2.0_Chr6g0307621 Rosa chinensis HOM05D000955 ORTHO05D003340 1.7e-32 142.5 96 89.6
RcHm_v2.0_Chr6g0307791 Rosa chinensis HOM05D000955 ORTHO05D003340 1.7e-32 142.5 96 89.6
FAN27G2801 Fragaria x ananassa HOM05D000955 ORTHO05D003340 7.0e-31 137.1 96 92.7
RcHm_v2.0_Chr5g0048521 Rosa chinensis HOM05D000955 ORTHO05D003340 1.5e-28 129.4 96 76.0
Prupe.1G437300 Prunus persica HOM05D000955 ORTHO05D003340 5.6e-28 127.5 96 67.7
RcHm_v2.0_Chr5g0048531 Rosa chinensis HOM05D000955 ORTHO05D003340 1.6e-27 125.9 96 82.3
Peaxi162Scf00064g00006 Petunia axillaris HOM05D000955 ORTHO05D003340 8.1e-19 97.1 91 56.0
Peaxi162Scf00064g00025 Petunia axillaris HOM05D000955 ORTHO05D003340 4.0e-18 94.7 86 54.7
COL.COLO4_26487 Corchorus olitorius HOM05D000955 ORTHO05D003340 2.6e-17 92.0 83 56.6
Cpa.g.sc49.7 Carica papaya HOM05D000955 ORTHO05D003340 3.4e-17 91.7 94 67.0
Gohir.A06G017800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 3.4e-17 91.7 97 49.5
Nitab4.5_0007986g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 3.4e-17 91.7 86 52.3
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 7.6e-17 90.5 94 46.8
Gorai.005G102900 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.3e-16 89.7 96 49.0
vmacro21529 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 1.3e-16 89.7 89 49.4
Potri.014G030900 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.7e-16 89.4 96 50.0
CAN.G1518.2 Capsicum annuum HOM05D000955 ORTHO05D003340 2.9e-16 88.6 86 50.0
CAN.G371.28 Capsicum annuum HOM05D000955 ORTHO05D003340 2.9e-16 88.6 96 50.0
Thecc.08G010100 Theobroma cacao HOM05D000955 ORTHO05D003340 2.9e-16 88.6 96 47.9
CSS0029458 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D003340 3.7e-16 88.2 92 50.0
Dinv39322 Davidia involucrata HOM05D000955 ORTHO05D003340 3.7e-16 88.2 93 68.8
Sopen04g032690 Solanum pennellii HOM05D000955 ORTHO05D003340 3.7e-16 88.2 94 48.9
COL.COLO4_26485 Corchorus olitorius HOM05D000955 ORTHO05D003340 6.4e-16 87.4 96 47.9
Solyc12g088860.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 6.4e-16 87.4 87 52.9
COL.COLO4_26486 Corchorus olitorius HOM05D000955 ORTHO05D003340 8.3e-16 87.0 96 46.9
Gorai.010G018500 Gossypium raimondii HOM05D000955 ORTHO05D003340 8.3e-16 87.0 97 49.5
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 8.3e-16 87.0 94 47.9
Sopen12g030750 Solanum pennellii HOM05D000955 ORTHO05D003340 8.3e-16 87.0 90 52.2
Gohir.D06G015900 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.1e-15 86.7 97 49.5
HanXRQChr09g0267871 Helianthus annuus HOM05D000955 ORTHO05D003340 1.1e-15 86.7 89 48.3
Aqoxy6G01348 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.4e-15 86.3 88 51.1
Manes.18G035800 Manihot esculenta HOM05D000955 ORTHO05D003340 1.4e-15 86.3 91 51.6
DCAR_008792 Daucus carota HOM05D000955 ORTHO05D003340 1.9e-15 85.9 91 50.5
Lj4C54T13 Lonicera japonica HOM05D000955 ORTHO05D003340 1.9e-15 85.9 101 46.5
Nitab4.5_0001580g0040 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.9e-15 85.9 89 47.2
Migut.C00586 Erythranthe guttata HOM05D000955 ORTHO05D003340 2.4e-15 85.5 84 51.2
Gohir.D06G015700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 3.2e-15 85.1 97 48.5
Aqoxy5G01248 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 4.1e-15 84.7 80 56.2
Potri.014G030500 Populus trichocarpa HOM05D000955 ORTHO05D003340 4.1e-15 84.7 93 46.2
Gorai.010G018700 Gossypium raimondii HOM05D000955 ORTHO05D003340 5.4e-15 84.3 97 48.5
Sabra14G0021800 Salix brachista HOM05D000955 ORTHO05D003340 5.4e-15 84.3 93 46.2
Peaxi162Scf00064g00002 Petunia axillaris HOM05D000955 ORTHO05D003340 7.1e-15 84.0 86 52.3
DCAR_008793 Daucus carota HOM05D000955 ORTHO05D003340 9.2e-15 83.6 91 49.5
Gohir.A06G017600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 9.2e-15 83.6 97 48.5
CAN.G1422.10 Capsicum annuum HOM05D000955 ORTHO05D003340 1.2e-14 83.2 91 47.3
Solyc12g088850.1 Solanum lycopersicum HOM05D000955 ORTHO05D003340 1.6e-14 82.8 87 47.1
Sopen12g030740 Solanum pennellii HOM05D000955 ORTHO05D003340 1.6e-14 82.8 87 47.1
Potri.014G030800 Populus trichocarpa HOM05D000955 ORTHO05D003340 2.1e-14 82.4 93 46.2
ECA232G3034 Erigeron canadensis HOM05D000955 ORTHO05D003340 2.7e-14 82.0 95 42.1
Nitab4.5_0006312g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.7e-14 82.0 86 47.7
Nn1g04889 Nelumbo nucifera HOM05D000955 ORTHO05D003340 1.3e-13 79.7 94 46.8
Zm00001eb100840 Zea mays HOM05D000955 ORTHO05D003340 1.7e-13 79.3 99 43.4
CAN.G1518.1 Capsicum annuum HOM05D000955 ORTHO05D003340 2.3e-13 79.0 87 47.1
Migut.C00587 Erythranthe guttata HOM05D000955 ORTHO05D003340 3.0e-13 78.6 91 44.0
DCAR_008791 Daucus carota HOM05D000955 ORTHO05D003340 6.6e-13 77.4 92 45.7
Sabra14G0021600 Salix brachista HOM05D000955 ORTHO05D003340 8.6e-13 77.0 86 48.8
Sabra14G0021900 Salix brachista HOM05D000955 ORTHO05D003340 8.6e-13 77.0 86 48.8
Gohir.A06G018100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.1e-12 76.6 98 46.9
Gohir.D06G016000 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.1e-12 76.6 98 46.9
Gorai.010G018800 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.1e-12 76.6 98 46.9
Medtr1g019720 Medicago truncatula HOM05D000955 ORTHO05D003340 1.5e-12 76.3 93 45.2
Migut.H00440 Erythranthe guttata HOM05D000955 ORTHO05D003340 1.9e-12 75.9 90 43.3
Potri.002G127000 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.9e-12 75.9 93 45.2
Nn5g30250 Nelumbo nucifera HOM05D000955 ORTHO05D003340 2.5e-12 75.5 86 46.5
Ca_13297_v3 Cicer arietinum L. HOM05D000955 ORTHO05D003340 3.3e-12 75.1 93 46.2
Gohir.D06G016100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 3.3e-12 75.1 98 48.0
MBI06_g36647_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 3.3e-12 75.1 96 44.8
HPP92_004112 Vanilla planifolia HOM05D000955 ORTHO05D003340 3.3e-12 75.1 77 49.4
TPR.G17533 Trifolium pratense HOM05D000955 ORTHO05D003340 4.3e-12 74.7 86 47.7
Gohir.A06G017700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 5.6e-12 74.3 98 46.9
Os09g0458900 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 5.6e-12 74.3 99 40.4
Aqoxy5G01246 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 7.3e-12 73.9 81 48.1
Gohir.D06G015800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 7.3e-12 73.9 98 45.9
Psat6g013520 Pisum sativum HOM05D000955 ORTHO05D003340 7.3e-12 73.9 93 44.1
Gorai.010G018600 Gossypium raimondii HOM05D000955 ORTHO05D003340 9.6e-12 73.6 98 45.9
PGSC0003DMG400007985 Solanum tuberosum HOM05D000955 ORTHO05D003340 1.2e-11 73.2 81 45.7
Hma1.2p1_0718F.1_g208350 Hydrangea macrophylla HOM05D000955 ORTHO05D003340 1.6e-11 72.8 91 44.0
Medtr1g019715 Medicago truncatula HOM05D000955 ORTHO05D003340 1.6e-11 72.8 93 43.0
Peaxi162Scf01890g00029 Petunia axillaris HOM05D000955 ORTHO05D003340 1.6e-11 72.8 90 47.8
Psat6g013560 Pisum sativum HOM05D000955 ORTHO05D003340 1.6e-11 72.8 93 43.0
MBI02_g02963_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.1e-11 72.4 97 46.4
TPR.G10919 Trifolium pratense HOM05D000955 ORTHO05D003340 2.1e-11 72.4 93 41.9
Os07g0619200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 2.8e-11 72.0 79 46.8
Phvul.009G064500 Phaseolus vulgaris HOM05D000955 ORTHO05D003340 2.8e-11 72.0 93 44.1
TPR.G17546 Trifolium pratense HOM05D000955 ORTHO05D003340 2.8e-11 72.0 93 41.9
Cc10_g04230 Coffea canephora HOM05D000955 ORTHO05D003340 4.7e-11 71.2 78 48.7
Rhsim07G0228900 Rhododendron simsii HOM05D000955 ORTHO05D003340 4.7e-11 71.2 90 42.2
Migut.K00765 Erythranthe guttata HOM05D000955 ORTHO05D003340 6.2e-11 70.9 88 42.0
Oeu004829.1 Olea europaea HOM05D000955 ORTHO05D003340 6.2e-11 70.9 79 48.1
Glyma.06G039400 Glycine max HOM05D000955 ORTHO05D003340 8.1e-11 70.5 93 44.1
Glyma.17G242800 Glycine max HOM05D000955 ORTHO05D003340 8.1e-11 70.5 93 41.9
Gohir.D02G091750 Gossypium hirsutum HOM05D000955 ORTHO05D003340 8.1e-11 70.5 60 58.3
Psat6g013720 Pisum sativum HOM05D000955 ORTHO05D003340 8.1e-11 70.5 94 41.5
Rhsim07G0229000 Rhododendron simsii HOM05D000955 ORTHO05D003340 8.1e-11 70.5 91 39.6
Sabra02G0099500 Salix brachista HOM05D000955 ORTHO05D003340 8.1e-11 70.5 97 46.4
Aqoxy5G01247 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.1e-10 70.1 80 46.2
arahy.Tifrunner.gnm1.ann1.LA24B5 Arachis hypogaea HOM05D000955 ORTHO05D003340 1.1e-10 70.1 87 46.0
Lsat_1_v5_gn_4_125520 Lactuca sativa HOM05D000955 ORTHO05D003340 1.1e-10 70.1 78 44.9
Psat6g013600 Pisum sativum HOM05D000955 ORTHO05D003340 1.1e-10 70.1 93 40.9
Glyma.04G038300 Glycine max HOM05D000955 ORTHO05D003340 1.4e-10 69.7 93 43.0
vmacro04455 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 1.8e-10 69.3 84 42.9
Duzib116G0076 Durio zibethinus HOM05D000955 ORTHO05D003340 3.1e-10 68.6 81 45.7
Glyma.06G039300 Glycine max HOM05D000955 ORTHO05D003340 3.1e-10 68.6 93 44.1
HPP92_004230 Vanilla planifolia HOM05D000955 ORTHO05D003340 4.0e-10 68.2 94 52.1
Psat6g013640 Pisum sativum HOM05D000955 ORTHO05D003340 8.9e-10 67.0 93 40.9
Rhsim07G0229500 Rhododendron simsii HOM05D000955 ORTHO05D003340 8.9e-10 67.0 80 41.2
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 1.2e-09 66.6 71 50.7
Eucgr.F00233 Eucalyptus grandis HOM05D000955 ORTHO05D003340 1.5e-09 66.2 83 44.6
ECA246G3551 Erigeron canadensis HOM05D000955 ORTHO05D003340 2.0e-09 65.9 78 43.6
MSTRG.3423 Avicennia marina HOM05D000955 ORTHO05D003340 2.6e-09 65.5 88 39.8
Medtr3g101610 Medicago truncatula HOM05D000955 ORTHO05D003340 2.6e-09 65.5 84 45.2
unitig_32.g10766 Utricularia gibba HOM05D000939 ORTHO05D000745 2.6e-09 65.5 77 44.2
CDE06G0816 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 3.4e-09 65.1 79 51.9
Eucgr.F00234 Eucalyptus grandis HOM05D000955 ORTHO05D003340 3.4e-09 65.1 84 41.7
Nitab4.5_0000453g0120 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.4e-09 64.7 78 46.2
Zm00001eb109460 Zea mays HOM05D000955 ORTHO05D003340 4.4e-09 64.7 88 43.2
CDE10G0233 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 5.8e-09 64.3 78 41.0
SalBow5G1664 Salvia bowleyana HOM05D000955 ORTHO05D003340 5.8e-09 64.3 90 41.1
SalBow5G5547 Salvia bowleyana HOM05D000955 ORTHO05D003340 5.8e-09 64.3 90 41.1
HanXRQChr02g0039431 Helianthus annuus HOM05D000955 ORTHO05D003340 1.3e-08 63.2 87 40.2
Oeu043559.1 Olea europaea HOM05D000955 ORTHO05D003340 1.3e-08 63.2 82 39.0
Potri.014G030700 Populus trichocarpa HOM05D000955 ORTHO05D003340 1.3e-08 63.2 80 45.0
Gorai.010G019000 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.2e-08 62.4 44 70.5
Rhsim07G0229100 Rhododendron simsii HOM05D000955 ORTHO05D003340 2.2e-08 62.4 80 40.0
TPR.G28116 Trifolium pratense HOM05D000955 ORTHO05D003340 2.2e-08 62.4 82 43.9
Os09g0458800 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 2.9e-08 62.0 78 39.7
Nn5g30251 Nelumbo nucifera HOM05D000955 ORTHO05D003340 3.8e-08 61.6 80 45.0
CDE10G0229 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 4.9e-08 61.2 92 38.0
unitig_748.g8402 Utricularia gibba HOM05D000955 ORTHO05D003340 4.9e-08 61.2 77 42.9
Gohir.D06G016150 Gossypium hirsutum HOM05D000955 ORTHO05D003340 6.4e-08 60.8 44 68.2
Manes.18G035900 Manihot esculenta HOM05D000955 ORTHO05D003340 8.4e-08 60.5 83 39.8
Medtr3g101600 Medicago truncatula HOM05D000955 ORTHO05D003340 1.1e-07 60.1 82 43.9
SalBow7G0951 Salvia bowleyana HOM05D000955 ORTHO05D003340 1.1e-07 60.1 78 44.9
Cpa.g.sc55.161 Carica papaya HOM05D000955 ORTHO05D003340 1.4e-07 59.7 88 37.5
Zm00001eb279150 Zea mays HOM05D000955 ORTHO05D003340 1.4e-07 59.7 79 44.3
Dinv39861 Davidia involucrata HOM05D000955 ORTHO05D003340 1.9e-07 59.3 78 39.7
Manes.12G102501 Manihot esculenta HOM05D000955 ORTHO05D003340 1.9e-07 59.3 87 40.2
CDE08G0020 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 2.4e-07 58.9 74 41.9
HanXRQChr05g0137741 Helianthus annuus HOM05D000955 ORTHO05D003340 2.4e-07 58.9 80 42.5
Aqoxy5G01245 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 3.2e-07 58.5 94 36.2
Lsat_1_v5_gn_3_90960 Lactuca sativa HOM05D000955 ORTHO05D003340 3.2e-07 58.5 88 35.2
Os03g0395200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 3.2e-07 58.5 78 47.4
Psat5g043640 Pisum sativum HOM05D000955 ORTHO05D003340 4.2e-07 58.2 88 40.9
Gohir.A12G070700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 5.4e-07 57.8 88 35.2
Gohir.D12G068600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 5.4e-07 57.8 88 35.2
Gorai.008G075000 Gossypium raimondii HOM05D000955 ORTHO05D003340 5.4e-07 57.8 88 35.2
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 5.4e-07 57.8 89 39.3
Rhsim07G0229300 Rhododendron simsii HOM05D000955 ORTHO05D003340 5.4e-07 57.8 50 54.0
SalBow7G3079 Salvia bowleyana HOM05D000955 ORTHO05D003340 5.4e-07 57.8 44 65.9
HanXRQChr15g0473701 Helianthus annuus HOM05D000955 ORTHO05D003340 7.1e-07 57.4 90 36.7
MBI02_g02964_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 7.1e-07 57.4 80 36.2
Lj4C144G12 Lonicera japonica HOM05D002458 ORTHO05D002603 1.6e-06 56.2 87 34.5
DCAR_010900 Daucus carota HOM05D000955 ORTHO05D003340 2.1e-06 55.8 89 33.7
Sabra14G0021700 Salix brachista HOM05D000955 ORTHO05D003340 2.1e-06 55.8 83 38.6
ECA246G2186 Erigeron canadensis HOM05D000955 ORTHO05D003340 3.5e-06 55.1 88 34.1
HanXRQChr12g0378991 Helianthus annuus HOM05D000955 ORTHO05D003340 3.5e-06 55.1 88 33.0
COL.COLO4_11400 Corchorus olitorius HOM05D000955 ORTHO05D003340 4.6e-06 54.7 78 39.7
HanXRQChr12g0378981 Helianthus annuus HOM05D000955 ORTHO05D003340 4.6e-06 54.7 88 31.8
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 7.8e-06 53.9 72 37.5


User provided reference genes

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